RetrogeneDB ID: | retro_pabe_3669 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:85275036..85275435(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 75.56 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLR-IVEPYIAWGYPNLKSVNE |
PAEPKL.FVIR.RGINGVSPKV..VLQ.L.L.QIFNGTF.KLN..S.NM...I.EPYIAW.YPNL..V.E | |
Retrocopy | PAEPKLTFVIRNRGINGVSPKV*RVLQFLCLCQIFNGTFIKLNNTSLNMFG<ILEPYIAWRYPNLNLVTE |
Parental | LIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKR-FKEANNFLWPFKLSSP |
L.YK..YGKINKK.IALT.N.LIA.SLGKYGIICME.LIHEI.T.GK..FK.ANNFL.PFKLSSP | |
Retrocopy | LVYKHDYGKINKKHIALTENTLIAPSLGKYGIICMEGLIHEISTDGKM>FKGANNFLSPFKLSSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |