RetrogeneDB ID: | retro_pabe_2807 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5_random:5048079..5048543(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 81.01 % |
Parental protein coverage: | 62.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RIRGIN-GVSPKVRKVLQLLR-LRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGK |
RIRGI..G..P...K.....R.LRQIFNG.FVKL.KASINMLRIVEPYIAWGYPNL..VNELIY.RGYGK | |
Retrocopy | RIRGIK<GCEPRGLKGVVAHR<LRQIFNGMFVKLDKASINMLRIVEPYIAWGYPNLNPVNELIYQRGYGK |
Parental | INKKRIALTDNA-LIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEG |
INKK.IALTDNA..IARSLGKYGIIC.ED.IH.IYTVGKRFKEANNFLWPFKL..P.G..KKKTTHFVEG | |
Retrocopy | INKK*IALTDNA>MIARSLGKYGIICVEDQIHKIYTVGKRFKEANNFLWPFKLPFPPGRVKKKTTHFVEG |
Parental | GDAGNREDQINRLIRRMN |
G.AGNREDQINRLIRRMN | |
Retrocopy | GNAGNREDQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |