RetrogeneDB ID: | retro_pabe_1908 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 22:35343317..35344059(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 87.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MEGVEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR- |
MEGVE.KKKVPAVPE.LKKK.RNF.ELKIKRLRKK.AQKMLRKARRKLIYEKAKH.HKE.RQM.RTEI.. | |
Retrocopy | MEGVEKKKKVPAVPEILKKK*RNFTELKIKRLRKKSAQKMLRKARRKLIYEKAKHCHKEHRQMDRTEIE< |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRG-INGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPY |
MAR.ARKAGNFY.PAEPKLAF.IRIRG.INGVSPKVRKVL.LL.L..IFNGTFVKLNKASINMLRIVE.Y | |
Retrocopy | MARVARKAGNFYIPAEPKLAFAIRIRGGINGVSPKVRKVLRLLCLPEIFNGTFVKLNKASINMLRIVESY |
Parental | IAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIIC-MEDLIHEIYTVGKRFKEANNFL |
IAWGYPNLKS.NELIYKRGYGK.NKKRIALTDN.LIARSLGKYG.IC..E.LIHEIYTVGK.FKEAN.FL | |
Retrocopy | IAWGYPNLKSLNELIYKRGYGKFNKKRIALTDNTLIARSLGKYGNIC<LEGLIHEIYTVGKCFKEANKFL |
Parental | WPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
WP.KLSSPRG.MKKKTTHFVEGGDAGNR.DQINRLIRR.N | |
Retrocopy | WPLKLSSPRGRMKKKTTHFVEGGDAGNRKDQINRLIRRIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .24 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .03 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2588 |