RetrogeneDB ID: | retro_pabe_933 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:64923642..64924224(-) | ||
Located in intron of: | ENSPPYG00000004732 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 82.47 % |
Parental protein coverage: | 78.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MEGVEE-KKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
MEGVEE.KKKVPAVPETLKKK.RNFAELKIK.LRKKFA.KML.KARRK.IYEKAKH.HKEYRQM.RTEI. | |
Retrocopy | MEGVEEKKKKVPAVPETLKKKQRNFAELKIKHLRKKFAEKMLQKARRKRIYEKAKHSHKEYRQMDRTEIQ |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
MAR.ARKAGNFYV..EPKL.F..RIRGINGVSPKV.KVL..L.LRQIFNGTFVKL.KASINM.RI.EPYI | |
Retrocopy | MARRARKAGNFYVLTEPKLSFSLRIRGINGVSPKV*KVLEFLHLRQIFNGTFVKLSKASINMVRIGEPYI |
Parental | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEI |
AW.YPNLK.VNELIYK..Y.KI.KK.IA.TDN.LIA.SLGKY.IICMEDL.HEI | |
Retrocopy | AWWYPNLK*VNELIYKCHYSKIEKKQIAMTDNTLIAQSLGKYDIICMEDLNHEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .12 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1128 |