RetrogeneDB ID: | retro_pabe_867 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:80542509..80543240(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 83.27 % |
Parental protein coverage: | 98.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MEGVEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRM |
ME.VEEK.K.PAVPET.KKK.R.FAELKIKRLRK.F.QKML.KARRKLIYEKAKHYHKE.RQM.R..IRM | |
Retrocopy | MERVEEKNKFPAVPETFKKKCRTFAELKIKRLRKNFSQKML*KARRKLIYEKAKHYHKEHRQM*RIAIRM |
Parental | ARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIA |
ARMARKAG.F.VPAEPKLAFVIR.RGINGVSPKV..VLQL..L.QIFNGTFVK.NKAS.NMLRIVEPYIA | |
Retrocopy | ARMARKAGSFCVPAEPKLAFVIRVRGINGVSPKVQMVLQLFCLHQIFNGTFVKINKASVNMLRIVEPYIA |
Parental | WGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPF |
WGYPN.KSVNELIYKR.YGKINKK.IALTDN.LIA.SLGKYGIICM..LIHEIYTVGK.F.E.NNFL.PF | |
Retrocopy | WGYPNPKSVNELIYKRDYGKINKKYIALTDNTLIAGSLGKYGIICMVNLIHEIYTVGKCFRETNNFL*PF |
Parental | KLSSPRGGMKK-KTTHFVEGGDAGNREDQINRLIR |
.LS.P..GMKK.KTTHFV.GGDAGNRED.INRLIR | |
Retrocopy | TLSAPQCGMKK<KTTHFVKGGDAGNREDKINRLIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .09 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1034 |