RetrogeneDB ID: | retro_pabe_2796 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:168629953..168630686(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 86.53 % |
Parental protein coverage: | 98.79 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | VEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARM |
V.E.KK.PAVPETLKKKRRNFAELKIK.LRKKFAQKML.KARRKL..EKAKHYHKEYRQ.YRTEIRM.RM | |
Retrocopy | VIEEKKFPAVPETLKKKRRNFAELKIKCLRKKFAQKML*KARRKLT*EKAKHYHKEYRQIYRTEIRMTRM |
Parental | ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGY |
ARKAGN.YVPAEPKL.FVIRIRGI.GVSP.V.KVL.LLRLRQIFNG.FVKL.KASINMLRIVEPYIAWGY | |
Retrocopy | ARKAGNSYVPAEPKLEFVIRIRGIKGVSPEV*KVLWLLRLRQIFNGMFVKLDKASINMLRIVEPYIAWGY |
Parental | PNLKSVNELIYKRGYGKINKKRIALTDNA-LIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKL |
PNL..VNELIY.RGYGKINKK.IALTDNA..IARSLGKYGIIC.ED.IH.IYTVGKRFKEANNFLWPFKL | |
Retrocopy | PNLNPVNELIYQRGYGKINKK*IALTDNA>MIARSLGKYGIICVEDQIHKIYTVGKRFKEANNFLWPFKL |
Parental | SSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
..P.G..KKKTTHFVEGG.AGNREDQINRL.RRMN | |
Retrocopy | PFPPGRVKKKTTHFVEGGNAGNREDQINRLVRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .03 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3399 |