RetrogeneDB ID: | retro_pabe_2762 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:95426479..95427069(-) | ||
Located in intron of: | ENSPPYG00000015636 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 79.21 % |
Parental protein coverage: | 79.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MEGVEEKKK-VPAVPETLKKKRRNFAELKIKRLR-KKFAQKMLRKARRKL-IYEKAKHYHKEYRQMYRTE |
ME.VEEKKK.VPAVPETLKKK.RNFAELKIK.LR.K....K...K.......YEKAKHYHKEYRQMYRTE | |
Retrocopy | MECVEEKKKKVPAVPETLKKK*RNFAELKIKSLR<KEVCPKDALKGKEEA<FYEKAKHYHKEYRQMYRTE |
Parental | IRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNK-ASINMLRIVE |
I.MARMARKAG.F.VP.EPKLAFVIRIRGINGVS.KV.K.LQLLRL.QI.NG.FVKLN..AS.NMLRIV. | |
Retrocopy | I*MARMARKAGHFCVPEEPKLAFVIRIRGINGVSQKV*KLLQLLRLHQILNGKFVKLNR<ASVNMLRIVK |
Parental | PYIAWG-YPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVG |
PYIA...YPNLK.VNELIYK.G..KINKK.IA.TDNALIARSLGKYGIICMEDLIHEIYTVG | |
Retrocopy | PYIAGS<YPNLKLVNELIYKHGCSKINKKQIAWTDNALIARSLGKYGIICMEDLIHEIYTVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .12 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .06 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3356 |