RetrogeneDB ID: | retro_pabe_2348 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:134610238..134610978(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 82. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MEGVEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRM |
MEGVEEKKKVPAVPET.KKK.RNF.ELKIK.LR.KFAQKML.KARRKLIYEKAKHYHKEY.QMYRTEI.. | |
Retrocopy | MEGVEEKKKVPAVPETVKKK*RNFTELKIKCLRNKFAQKMLQKARRKLIYEKAKHYHKEYMQMYRTEIQI |
Parental | ARMARKAGNFYVPAEPKLAFVIRIRG-INGVSPKVRKVLQLLRLRQIFNGTFVKLNKASI-NMLRIVEPY |
.RMARKAGNFYVPAEPKLAFVIRIRG.IN.V.PKV.KVLQLL.L.QIFN..FVKL..ASI.N.LR.VEPY | |
Retrocopy | SRMARKAGNFYVPAEPKLAFVIRIRG>INWVNPKV*KVLQLLCLHQIFNRNFVKLSRASI<NILRFVEPY |
Parental | IAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVG-KRFKEANNFL |
IAW.YP.LKSVN.LIYK.GY.K.NKK..A.TDN.LIARSLGKYG.ICMEDLIHEIYT.G.K..KEANNFL | |
Retrocopy | IAWAYPILKSVNKLIYKCGYSKMNKKLLAPTDNNLIARSLGKYGLICMEDLIHEIYTIG<KMLKEANNFL |
Parental | WPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
WPFKLSSP..GMKKKTT.FVEGGDA.NREDQ.NR.IRR.N | |
Retrocopy | WPFKLSSPQVGMKKKTTNFVEGGDADNREDQMNRFIRRIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .03 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .03 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |