RetrogeneDB ID: | retro_pabe_3139 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:49442221..49442934(-) | ||
Located in intron of: | ENSPPYG00000017645 | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000017647 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 74.9 % |
Parental protein coverage: | 98.38 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | VEEKKKV-PAVPETLKKKRRNFAELKIKRLRKKFA-QKMLRKARRKLIYEKAKHYHKEYRQMY-RTEIRM |
.EEKK.V.PAVPETLKKK.RNF.ELKIK.LR.KFA.Q..L.KA..KLI.EKAKHYHKEYRQM..RTEI.M | |
Retrocopy | IEEKKQV>PAVPETLKKKQRNFTELKIKHLRNKFA>QEILPKASWKLIDEKAKHYHKEYRQMG>RTEIQM |
Parental | ARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIA |
ARMARKA..FYVPAE.KLAFVIRIR.IN.VSPKV.K.L.LLRL.QIF.G.FVKLNK....MLRIVEPYIA | |
Retrocopy | ARMARKADHFYVPAECKLAFVIRIRDINDVSPKVQKML*LLRLCQIFSGSFVKLNK--LSMLRIVEPYIA |
Parental | WGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPF |
.GYPNLKS.NELIYK..YGKINKKR.AL.D..LI..S....G.IC.EDLI.EI.T.GK.FKEANNFL.PF | |
Retrocopy | RGYPNLKSLNELIYKHCYGKINKKRTALIDTNLIV*S----GFICVEDLIREICTAGKHFKEANNFLYPF |
Parental | KLSSPRGGMKKKTTHFVE-GGDAGNREDQINRLIRRM |
KLSS...GMK.KTTHF.E.GGD.GNREDQIN.LIRR. | |
Retrocopy | KLSSL*DGMKRKTTHFIE<GGDVGNREDQINGLIRRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3717 |