RetrogeneDB ID: | retro_pabe_2808 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5_random:5221624..5222228(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSPPYG00000018671 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q5R9R4] |
Percent Identity: | 77.45 % |
Parental protein coverage: | 81.78 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | KRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLA |
K.R..AELKIK.LRKKFAQKML.K.RRKLIYE.A.HYHKEYRQ..RT.I.MARM.RK.GNF.VPAEPKLA | |
Retrocopy | KQRDCAELKIKCLRKKFAQKMLQKGRRKLIYE*ARHYHKEYRQLDRTAI*MARMSRKSGNFCVPAEPKLA |
Parental | FVIRIRGINGVSPKV-RKVLQLLRLRQIFNGTFVKLNK-ASINMLRIVEPYIAWGYPNLKSVNELIYKRG |
FVIRIRG.NG.SPKV.RKVLQLL.L.QI.NGTFVKLNK..SINMLRIVEPYIAW.YP.L..VNELIY..G | |
Retrocopy | FVIRIRGVNGGSPKV<RKVLQLLCLHQISNGTFVKLNK<TSINMLRIVEPYIAWRYPKLRPVNELIY*CG |
Parental | YGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKK |
YGKI.KKRIAL.DN.LIA..LGKYGI...ED.I.E..T.GK.F.EAN.FLWPFKLSSP.GGMKK | |
Retrocopy | YGKIKKKRIALMDNTLIA*PLGKYGILSLEDQIPELCTAGKHFEEANDFLWPFKLSSP*GGMKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .23 RPM |
SRP007412_cerebellum | 0 .12 RPM | 236 .51 RPM |
SRP007412_heart | 0 .00 RPM | 246 .64 RPM |
SRP007412_kidney | 0 .00 RPM | 458 .95 RPM |
SRP007412_liver | 0 .00 RPM | 335 .15 RPM |