RetrogeneDB ID: | retro_fcat_1611 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:15184678..15185023(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 74.78 % |
Parental protein coverage: | 58.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AVALKPPETLTDESLSSWAAPRPLTSLIPSRGFQTSAASRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG |
...LK.PETLTDESL.S.A.P..LTSLIPS..F.TS....D.DTAAKF.GAGA..VGVAGSGA.IGT.FG | |
Retrocopy | STVLKSPETLTDESLISLADPNLLTSLIPSHSFSTSTILNDMDTAAKFTGAGASKVGVAGSGARIGTIFG |
Parental | SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
SLIIGYAR.PSLK..LFSYAILGFAL.E.MGLFCLMVAFLILF.. | |
Retrocopy | SLIIGYARIPSLKLKLFSYAILGFALLETMGLFCLMVAFLILFVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |