RetrogeneDB ID:

retro_mluc_575

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429768:2859524..2859968(-)
Located in intron of:ENSMLUG00000012837
Retrocopy
information
Ensembl ID:ENSMLUG00000029711
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000011860
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_575
AGCAGCTCCCCTCATCCCCTGAAAATGTATGCCTGCACCAAGTTTGTCTCCGCCCCCTCCTTGGTCCGGAGCACCTCTCA
GCTGAGCCGGTCAATGTCTGCAGTGGTGCTGAAACGACCAGAGACACTGACAGATGAGAGCCTCAGCAGCTTGGCAGCCC
CACGTCCCCTGACCTCGCTTATTTCTAGCCGTAGCTTCCAAACCAGTGCCATTTCAAGGGACATCGACACAGCAGCCAAG
TTCATTGGGGCTGGGGCTGCCACAGTAGGGGTGGCAGGCTCTGGGGCTGGAATTGGGACTGTGTTTGGGAGCCTCATCAT
TGGTTATGCCAGGAACCCTTCTCTGAAGCAACAGCTCTTCTCCTACGCCATTCTGGGCTTTGCCCTCTCAGAGGCCATGG
GGCTCTTTTGCCTGATGGTGGCCTTTCTCATCCTCTTCGCCATG

ORF - retro_mluc_575 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 99.33 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSSSPHPLKMYACTKFVSAPSLVRSTSQLSRSMSAVVLKRPETLTDESLSSLAAPRPLTSLISSRSFQTSA
SSSPHPLKMYACTKFVSAPSLVRSTSQLSRSMSAVVLKRPETLTDESLSSLAAPRPLTSLISSRSFQTSA
RetrocopySSSPHPLKMYACTKFVSAPSLVRSTSQLSRSMSAVVLKRPETLTDESLSSLAAPRPLTSLISSRSFQTSA
ParentalISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMV
ISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMV
RetrocopyISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMV
ParentalAFLILFAM
AFLILFAM
RetrocopyAFLILFAM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_575 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 33 parental genes, and 258 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000061918 retrocopies
Bos taurus ENSBTAG0000000573511 retrocopies
Cavia porcellus ENSCPOG000000228893 retrocopies
Dipodomys ordii ENSDORG000000029551 retrocopy
Equus caballus ENSECAG000000230212 retrocopies
Erinaceus europaeus ENSEEUG000000030511 retrocopy
Echinops telfairi ENSETEG0000000596840 retrocopies
Felis catus ENSFCAG0000000150213 retrocopies
Homo sapiens ENSG000001353906 retrocopies
Gorilla gorilla ENSGGOG000000156415 retrocopies
Macropus eugenii ENSMEUG0000000466167 retrocopies
Microcebus murinus ENSMICG000000116864 retrocopies
Myotis lucifugus ENSMLUG000000117384 retrocopies
Myotis lucifugus ENSMLUG00000011860 13 retrocopies
Myotis lucifugus ENSMLUG000000128221 retrocopy
Macaca mulatta ENSMMUG000000162413 retrocopies
Mustela putorius furoENSMPUG000000059276 retrocopies
Mus musculus ENSMUSG000000626831 retrocopy
Nomascus leucogenys ENSNLEG000000176864 retrocopies
Oryctolagus cuniculus ENSOCUG000000089334 retrocopies
Otolemur garnettii ENSOGAG000000036114 retrocopies
Ochotona princeps ENSOPRG000000029781 retrocopy
Procavia capensis ENSPCAG000000086793 retrocopies
Pongo abelii ENSPPYG000000045867 retrocopies
Pan troglodytes ENSPTRG000000050236 retrocopies
Pteropus vampyrus ENSPVAG000000122911 retrocopy
Rattus norvegicus ENSRNOG000000153206 retrocopies
Sorex araneus ENSSARG000000010277 retrocopies
Sarcophilus harrisii ENSSHAG000000057264 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000082173 retrocopies
Tupaia belangeri ENSTBEG000000057484 retrocopies
Tarsius syrichta ENSTSYG000000034334 retrocopies
Vicugna pacos ENSVPAG000000004091 retrocopy



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