RetrogeneDB ID: | retro_eeur_79 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_4703:109028..109340(+) | ||
Located in intron of: | ENSEEUG00000003096 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSEEUG00000003051 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 84.76 % |
Parental protein coverage: | 67.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SQLLSRSLSAVVLKQPETLTDESINSLAAPRPMTSLIPRHSFQTSSISRDIDTAAKFIGAGAATVGVAGS |
S........AVVLKQPETLTDESINSLAAP.PMT.LIPRHSFQTSSISRDIDTAAKFIGA.AATVGVAGS | |
Retrocopy | SERANPRMAAVVLKQPETLTDESINSLAAPHPMTWLIPRHSFQTSSISRDIDTAAKFIGARAATVGVAGS |
Parental | GAGIGTVFESLIIGYARNPSLKQQLFSYAILGFAL |
GAGIG.VF.SLIIGYARNPSLKQQLFS.A.LG.AL | |
Retrocopy | GAGIGSVFGSLIIGYARNPSLKQQLFSSA-LGAAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .45 RPM | 102 .00 RPM |
SRP017611_kidney | 4 .31 RPM | 232 .74 RPM |
SRP017611_liver | 2 .25 RPM | 144 .06 RPM |