RetrogeneDB ID: | retro_fcat_1345 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:62133927..62134400(-) | ||
Located in intron of: | ENSFCAG00000004320 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 57.5 % |
Parental protein coverage: | 78.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LLCTGSSSPATAPHPLKMYTCAKFVSSPFLVRSTSQLLSRSLSAVALKPPETLTDE---SLSSWAAPRPL |
LL..GS.SPAT.P..LK.YTC..F.S..FLVRST.QLLS.SLSAV.LK.P.T.T.......S....P.PL | |
Retrocopy | LLSAGSNSPATLPLVLKIYTCSEFISTRFLVRSTCQLLSLSLSAVVLKQP*TPTGDRQVRVSAVWHPCPL |
Parental | TSLIPSRGFQ-TSAASRDIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAIL |
TSL.P...F......SR.I.T.AKF.GAG.A....VAG....IG..FGS.II.Y.RNPSLKQQLF.Y..L | |
Retrocopy | TSLVPICSFH>SREVSRNINTIAKFAGAGTAI>ADVAGT*TEIGIMFGSFIIDYTRNPSLKQQLF-YTSL |
Parental | GFALSEAMGLFCLMVAFLIL |
.FA.SE..G.FCL.VA.LIL | |
Retrocopy | DFAFSEVRGFFCLIVAVLIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |