RetrogeneDB ID: | retro_hsap_1332 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:49840643..49841102(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000258401 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSG00000135390 | ||
Aliases: | ATP5G2, ATP5A | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 78.98 % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GSSSPATAPHPLKM-FACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSS |
GSSS.ATAPHPLKM..AC.KF.ST.SLVK.TSQLLS.PLSAVVLK.PE.LTDESLSSLAVSCPLTSL..S | |
Retrocopy | GSSSSATAPHPLKM<VACFKFLSTSSLVKNTSQLLSHPLSAVVLK*PETLTDESLSSLAVSCPLTSLAHS |
Parental | RSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLII-GYARNPSLKQQLFSYAILGFAL-SE |
RSFQT.AI.RDIDTA.KF.G.GAATV.VAGSGA....VF.SLI..G.ARNPSLKQQLFS.AI.GFAL... | |
Retrocopy | RSFQTRAIPRDIDTASKFTGVGAATVRVAGSGAETAIVFESLIM<GHARNPSLKQQLFSCAIPGFAL<LG |
Parental | AMGLFCLMVAFLILFAM |
A.GLFCLMVAFL.LFAM | |
Retrocopy | AVGLFCLMVAFLTLFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 86 .67 RPM |
bodymap2_adrenal | 0 .00 RPM | 112 .27 RPM |
bodymap2_brain | 0 .00 RPM | 54 .31 RPM |
bodymap2_breast | 0 .00 RPM | 76 .69 RPM |
bodymap2_colon | 0 .12 RPM | 134 .38 RPM |
bodymap2_heart | 0 .00 RPM | 118 .41 RPM |
bodymap2_kidney | 0 .00 RPM | 105 .84 RPM |
bodymap2_liver | 0 .00 RPM | 69 .73 RPM |
bodymap2_lung | 0 .00 RPM | 89 .06 RPM |
bodymap2_lymph_node | 0 .00 RPM | 91 .95 RPM |
bodymap2_ovary | 0 .00 RPM | 99 .58 RPM |
bodymap2_prostate | 0 .00 RPM | 163 .62 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 175 .29 RPM |
bodymap2_testis | 0 .00 RPM | 74 .07 RPM |
bodymap2_thyroid | 0 .00 RPM | 92 .97 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 161 .58 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .02 RPM |