RetrogeneDB ID: | retro_fcat_226 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:42627922..42628399(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 76.1 % |
Parental protein coverage: | 80.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CLLCTGSSSPATAPHPLKMYTCAKFVSSPFLVRSTSQLLSRSLSAVALKPPETLTDESLSSWAAPRPLTS |
CLLCT.S.SPA..PH.LKMYT.AK..S.PFLVRST.QLLS.SLSAV.LKPPE.LTD.SLSS.A.P.PLTS | |
Retrocopy | CLLCTRSISPAIVPHSLKMYTHAKSFSTPFLVRSTTQLLSGSLSAVVLKPPEILTDKSLSSLATPCPLTS |
Parental | LIPSRGFQTSAASRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFAL |
..PS..FQ.SA.SR.ID.AAKF.GAG.A.V.VAGS.....TVFG.LIIGYARN.SLKQQLFSYAILGF.L | |
Retrocopy | FTPSYSFQISAISRGIDIAAKFTGAGSALVVVAGSVTVTVTVFGILIIGYARNLSLKQQLFSYAILGFTL |
Parental | SEAMGLFCLMVAFLILFAM |
SE.MGLFCLMVAFLILFAM | |
Retrocopy | SEVMGLFCLMVAFLILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |