RetrogeneDB ID: | retro_fcat_353 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:143342871..143343257(+) | ||
Located in intron of: | ENSFCAG00000003843 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 66.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | PFLVRSTSQLLSRSLSAVALKPPETLTDESLSSW-AAPRPLTSLIPSRGFQTSAASRDI-DTAAKFIGAG |
PFLVRSTSQLLS.SLSAV.LKP.ETLTD..L..W.A.P.P.TS.IPSR.FQTSA.SRD..DTAAK..GAG | |
Retrocopy | PFLVRSTSQLLSQSLSAVSLKPLETLTDGALAAW<AVPHPPTSRIPSRSFQTSAISRDR<DTAAKCTGAG |
Parental | AATVGVAGSGAGIGTVFGSLIIGYA-RNPSLKQQLFSYAI-LGFALSEAMGLFCLMVAFLILFAM |
AATVGVAGS.AG.GT.FGSLIIGYA...P.L..QLFSY.I.LGFAL.EAMGLFC...AFL.LF.M | |
Retrocopy | AATVGVAGSRAGTGTAFGSLIIGYA<QEP-LPEQLFSYVI<LGFALPEAMGLFCMVMAFLVLFSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |