RetrogeneDB ID: | retro_fcat_1952 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:117870561..117871044(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 61.31 % |
Parental protein coverage: | 80.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | LCLLCTG-SSSPATAPHPLKMYTC-AKFVSSPFLVRSTSQLLSRSLSAVALKPPE-TLTDESLSSWAAPR |
L.LLCTG.S.SPA..PHPLK.Y...A..V.SP..V.ST.Q.L..SLS.V.LK.P..TLTD..LS..A.P. | |
Retrocopy | LHLLCTG<SGSPAAVPHPLKKYAV<ARLVPSPSSV-STCQVLRGSLSSVVLKSPR<TLTDQILSRSARPH |
Parental | PLTS--LIPSRGFQTSAASRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIG-YARNP-SLKQQLFS |
...S..L.PS..F.T.A.SRD.DTAAKF.GAGAAT.GVAG.GAGIGT.FGSL..G...R.P.S.K..L.S | |
Retrocopy | VP*SHSLVPSGSFRTRALSRDVDTAAKFVGAGAATAGVAGTGAGIGTAFGSLVLGEKTRSP<SVK*RLLS |
Parental | YAILGFALSE-AMGLFCLMVAFLILFAM |
YAILGFALSE.A.G..C..VAFLIL.A. | |
Retrocopy | YAILGFALSE>ALGPLCPTVAFLILVAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |