RetrogeneDB ID: | retro_amel_1309 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193177.1:135018..135522(+) | ||
Located in intron of: | ENSAMEG00000017567 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSAMEG00000000619 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 75.29 % |
Parental protein coverage: | 83.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SPAPLCLLCTGSRLSA-TAPHPLKMYACAKFVSTPFLAKSTSQLLSRSLSAVVLKPPETLTDE----SLS |
.PAPLCLLCTGS...A.TAPHPLKMY..AKF.STPF....TS.LLSRS.SAVVLKPPETLTDE....SL. | |
Retrocopy | APAPLCLLCTGSSSPA>TAPHPLKMYTGAKFISTPFVVRTTSPLLSRSPSAVVLKPPETLTDEVPSKSLG |
Parental | SLAAPRPLTSLIPSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVF-GSLIIGYARNPSLKQQ |
SLAAP.P.TSLIP.RSF..S.ISRDIDTAAKF.GA.AA.VGVAGSGA..GTV..GSLIIGYA..P.LKQQ | |
Retrocopy | SLAAPHPPTSLIPHRSF*ASTISRDIDTAAKFTGARAAGVGVAGSGAETGTVL<GSLIIGYAGHPTLKQQ |
Parental | LFSYAILGFALSEAMGLFCLMVAFLILFAM |
LFSY.ILG.A..EAMGLF.L.VAF.ILFAM | |
Retrocopy | LFSYTILGLAVLEAMGLFRLLVAFVILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |