RetrogeneDB ID: | retro_sara_377 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_185414:1818..2193(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSSARG00000001027 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 63.91 % |
Parental protein coverage: | 81.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | VRSTSQ-VLSRSLSAVVL-KRPETPTDESRGSLAA-PRPLTSLVPSRSFQTSAISRDIDTAAKFIGAGAA |
VRS.S...LSRSLSA.VL.K.PE......R.S..A.P.PLTS.....SFQTSAISRD.DTAA.F.GAGAA | |
Retrocopy | VRSISR<TLSRSLSASVL>KAPEA--ERGRSSFVA<PCPLTSPDMLLSFQTSAISRDTDTAAQFTGAGAA |
Parental | TVGVAGSGAGIGTVFGS-LIIGYARN-PSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
TVG.AGSGAG.GTVF.S..I.G.A.N.P.LKQQL.....LGFA..EAMGLF..MVAF.IL..M | |
Retrocopy | TVGAAGSGAGVGTVF*S<PILGDAWN<PTLKQQLLFSPMLGFAFWEAMGLFFRMVAFAILLSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |