RetrogeneDB ID: | retro_ggor_1737 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:85619349..85619829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSGGOG00000015641 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.12 % |
Parental protein coverage: | 80.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSRPLT |
LCL.C.G.SSPATAPHPLKM..CSKFVSTPSLVKS.SQLLS..L.AVVLKRPE.LT.E.LSSL.VSRPLT | |
Retrocopy | LCLPCTGPSSPATAPHPLKMYTCSKFVSTPSLVKSASQLLSHLLPAVVLKRPETLTGENLSSLTVSRPLT |
Parental | SLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFA |
SLV..RS...SAISRDIDT.AKFIGAGAATV.VAGSGAGI.TVFGSLIIGYARNPSLKQQLFSY.ILGF. | |
Retrocopy | SLVPGRSLESSAISRDIDTTAKFIGAGAATVWVAGSGAGIATVFGSLIIGYARNPSLKQQLFSYTILGFT |
Parental | LSEAMGLFCLMVAFLILFAM |
..E.MGLFCLMVAFLILF.M | |
Retrocopy | F*ETMGLFCLMVAFLILFPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 116 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 115 .83 RPM |
SRP007412_heart | 0 .03 RPM | 147 .97 RPM |
SRP007412_kidney | 0 .08 RPM | 140 .13 RPM |
SRP007412_liver | 0 .16 RPM | 117 .78 RPM |
SRP007412_testis | 0 .10 RPM | 62 .37 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2195 |
Pan troglodytes | retro_ptro_1668 |
Pongo abelii | retro_pabe_2073 |