RetrogeneDB ID: | retro_fcat_405 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:149578393..149578796(-) | ||
Located in intron of: | ENSFCAG00000030688 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 76.06 % |
Parental protein coverage: | 69.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | AKFVSSP-FLVRSTSQLLSRSLSAVALKPPETLTDESLSSW-AAPRPLTSLIPSRGFQTSAASRDI-DTA |
AK.VS.P.FLVRSTSQLLS.SLSAV.LKP.ETLTD..L..W.A.P.PLTS.IPSR.F.TSA.SRD..DTA | |
Retrocopy | AKLVSAP<FLVRSTSQLLSPSLSAVSLKPLETLTDGALAAW<AVPHPLTSRIPSRSFRTSAISRDR<DTA |
Parental | AKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA-RNPSLKQQLFSYAI-LGFALSEAMGLFCLMVAFLILF |
AK..GAGAATVGVAGS.AG.GTVFGSLIIGYA...P.L..QLFSY.I.LGFAL.EA.GLFC.MVAFLILF | |
Retrocopy | AKCTGAGAATVGVAGSRAGTGTVFGSLIIGYA<QEP-LPEQLFSYVI<LGFALPEATGLFCMMVAFLILF |
Parental | AM |
AM | |
Retrocopy | AM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |