RetrogeneDB ID: | retro_ggor_2543 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:125077871..125078292(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSGGOG00000015641 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.44 % |
Parental protein coverage: | 71.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SAPLCLLCSGSSSPATAPHPLKMFACSKFVST-PSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVS |
S.PL.........P.....PLKM..C.K.V.T..SL..ST.Q.LS.PLSAVVLK.PE.LTDES.S.LA.. | |
Retrocopy | SLPLSTFSALGKLPCPSLSPLKMYTCAKCVPT<LSLFESTCQVLSPPLSAVVLKQPETLTDESFSNLAAP |
Parental | RPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARN-PSLKQQLFSYA |
.P.TSL..S.SFQTS..SRD...AAKFIGA....V..AGSGA.I..VFGSL.I.YA.N.P.LKQQ.FSYA | |
Retrocopy | HPPTSLNPSHSFQTSTTSRDTGIAAKFIGARTSKVRTAGSGAKIAAVFGSLTIDYAKN<PCLKQQVFSYA |
Parental | ILG |
ILG | |
Retrocopy | ILG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 116 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 115 .83 RPM |
SRP007412_heart | 0 .00 RPM | 147 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 140 .13 RPM |
SRP007412_liver | 0 .00 RPM | 117 .78 RPM |
SRP007412_testis | 0 .00 RPM | 62 .37 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3782 |
Pan troglodytes | retro_ptro_2563 |
Pongo abelii | retro_pabe_3088 |
Equus caballus | retro_ecab_793 |