RetrogeneDB ID: | retro_fcat_668 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:164953494..164953888(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 67.91 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PSFRSSRPPPAPLCLLCTGSSSPATAPHPLKMYTCAKFVSSP-FLVRSTSQLLSRSLSAVALKPPETLTD |
P.F.SS....AP.CLL.TG..S.AT.PHPLK.Y..AK..S.P.FLVRST.QLLSRS.SAV.LKPPETLTD | |
Retrocopy | PEFSSSSR--APTCLLGTGCRSSATGPHPLKIYASAKLISTP>FLVRSTAQLLSRSRSAVSLKPPETLTD |
Parental | ESLSSWAAPRPLTSLIPSRGFQTSAASRDIDTAAK-FIGAGAATVGVAGSGAGIGTVFGSLIIG |
ESLSS.AAP.PLTSLI.S..FQT.A.S.DI........GAG.A.VGVAG.GAGIGTV.GSL.IG | |
Retrocopy | ESLSS*AAPCPLTSLIFSCSFQTGAISKDIQRSSQGHCGAGTAMVGVAGPGAGIGTVSGSLNIG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |