RetrogeneDB ID: | retro_fcat_363 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:6032071..6032554(-) | ||
Located in intron of: | ENSFCAG00000001594 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 84.47 % |
Parental protein coverage: | 81.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PLCLLCTGSSSPATAPHPLKMYTCAKFVSSPFLVRSTSQLLSRSLSAVALKPPETLTDESLSSWAAPRPL |
PLCLL.TGSSS.ATAP.PLKM..CAKFVS.P.LVRST.QLLSRSLSAVALKPPETLTD.SLSSWAAPRPL | |
Retrocopy | PLCLLRTGSSSLATAPRPLKMSACAKFVSTPSLVRSTCQLLSRSLSAVALKPPETLTDASLSSWAAPRPL |
Parental | TSLIPSRGFQTSAASRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF |
TSLIPSR.FQTS.ASRD.DTAAKFIG..AATVGVAGSGAGIGTV.GSLI.GYAR.PSLKQQLFS..ILGF | |
Retrocopy | TSLIPSRSFQTSVASRDVDTAAKFIGTRAATVGVAGSGAGIGTVSGSLITGYARKPSLKQQLFSSTILGF |
Parental | ALSEAMGLFCLMVAFLILFAM |
AL.EA..LFCLM.AF.IL.AM | |
Retrocopy | ALPEATRLFCLMAAFCILIAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |