RetrogeneDB ID: | retro_sara_73 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_2055:53357..53790(+) | ||
Located in intron of: | ENSSARG00000012091 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSSARG00000001027 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 65.31 % |
Parental protein coverage: | 91.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SPLSPATAPHP-LKMYACAKFVSTPIVVRSTSQVLSRSLSAVVLKRPETPTDESRGSLAAPRPLTSLVPS |
SP...A..P.P.LKMY.CAK..ST..V.RS.S.VLS..LSAVV..RPETPTDES...L.A.RPLTSLV.S | |
Retrocopy | SPVEAAPSPQP<LKMYDCAKHISTSEVIRSASPVLSYVLSAVVMERPETPTDESLSNLVASRPLTSLVLS |
Parental | RSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI-IGYARNPSLKQQL-FSYAILGFALSE |
.SFQTS.IS.D.DTAAKF.G.GAATVGVAG...G.GTVFG.LI..G....P.LKQQL...YAILG.AL.E | |
Retrocopy | CSFQTSTISKDTDTAAKFTGTGAATVGVAGF*GGTGTVFGCLIRHGLCQDPFLKQQL<LLYAILGSALLE |
Parental | AMGLFCL |
..GL.CL | |
Retrocopy | TTGLYCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |