RetrogeneDB ID: | retro_fcat_351 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:139388605..139389078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 75. % |
Parental protein coverage: | 80.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | LCLLCTGSSSPATAPHPLKMYTCAKFVSSP-FLVRSTSQLLSRSLSAVALKPPETLTDESLSSW-AAPRP |
LC.LCTGSSSPATAPHPLKM..C.K.VS.P.FLVRSTSQLLS.SLSAV.LKP.ETLTD..L..W.A.P.P | |
Retrocopy | LCHLCTGSSSPATAPHPLKMSACPKLVSAP<FLVRSTSQLLSQSLSAVSLKPLETLTDGALAAW<AVPHP |
Parental | LTSLIPSRGFQTSAASRDI-DTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA-RNPSLKQQLFSYAI |
.TS.IPSR.FQTSA.SRD...TAAK.IGAGAATVGVAGS.AG.GT.FGSLIIGYA...P.L..QLFSY.I | |
Retrocopy | PTSRIPSRSFQTSAISRDR<GTAAKCIGAGAATVGVAGSRAGTGTAFGSLIIGYA<QEP-LPEQLFSYTI |
Parental | LGFALSEAMGLFCLMVAFLILFAM |
LGFAL.EAMGLFC...AFL.LF.M | |
Retrocopy | LGFALPEAMGLFCMVMAFLVLFSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |