RetrogeneDB ID: | retro_opri_671 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_2312:63117..63510(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSOPRG00000002978 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 53.28 % |
Parental protein coverage: | 68.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MYACSKLVST-PCLVRSVSQLLSRPLSAVVLKRPETLTDERLSSVAVPCPRTSLLPSRSFQTSIVSRDID |
M..C..L..T.PC....V.....RP.S...L..PE..T.E.......P......L..R..QTS..SR.ID | |
Retrocopy | MFGCANLTCT<PCFELRVTY---RPISTSLLS*PEVRTREVSVCLMEPTMMWTQLICRESQTSAISRGID |
Parental | TAAKFIGAGAATVGVAG-SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAF |
.AAKFIGAGA.T.GVAG.SGA..GT.FGSLIIGYARN.SLKQQLFS.....F.LSE..G..CL.VAF | |
Retrocopy | SAAKFIGAGA-TAGVAG>SGAAVGTLFGSLIIGYARNSSLKQQLFSHMLS*FVLSEVIGSLCLTVAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |