RetrogeneDB ID: | retro_rnor_1286 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:16343584..16343919(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5g2 | ||
Ensembl ID: | ENSRNOG00000015320 | ||
Aliases: | None | ||
Description: | ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q06646] |
Percent Identity: | 85.84 % |
Parental protein coverage: | 78.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | CSKFVSTRSLIRSTSQLLSRPLSAVELKRPQMPTDEGLSCLAVRRPLTSLIPS-RSFQTSAISRDIDT-A |
C...VSTRS.IRS.SQLLS.PLS.VELKRPQMPTDEGLS.LAV.RPLTSLIPS..SFQTSAISRDIDT.A | |
Retrocopy | CLLQVSTRSPIRSASQLLSCPLSSVELKRPQMPTDEGLSSLAVWRPLTSLIPS>HSFQTSAISRDIDT>A |
Parental | AKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFS |
AKFIG.GAA.VGVAGSGAGIGTV.GSLIIGYARN.SLKQQLFS | |
Retrocopy | AKFIGPGAAIVGVAGSGAGIGTVLGSLIIGYARNSSLKQQLFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 66 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 168 .45 RPM |
SRP017611_liver | 0 .00 RPM | 92 .45 RPM |