RetrogeneDB ID: | retro_btau_1405 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:107331631..107332050(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSBTAG00000005735 | ||
Aliases: | None | ||
Description: | ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P07926] |
Percent Identity: | 80.99 % |
Parental protein coverage: | 98.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TCAKFVSTPSLIRRTSTVLSRSLSAVVVRRPETLTDESHSSLAVVPRPLTTSLTPSRSFQTSAISRDIDT |
TC.KFVSTPSLIR.TST.LSRSLSAVV.RR.ETL.DESHSSLA..PRPLTTSLT.S.SF.TSAISRDID. | |
Retrocopy | TCTKFVSTPSLIRGTSTLLSRSLSAVVLRRRETLRDESHSSLAA-PRPLTTSLTSSHSFHTSAISRDIDP |
Parental | AAKFI-GAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF |
AAKF..GAGA.TVGVAG..AG.GTVFG.LIIGY.R.PSLKQ.LFS.AILGFAL.EAMGLFCL..AFL.LF | |
Retrocopy | AAKFL<GAGAPTVGVAGFRAGMGTVFGRLIIGYDRSPSLKQLLFS*AILGFALPEAMGLFCLLAAFLLLF |
Parental | AM |
AM | |
Retrocopy | AM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 36 .77 RPM |
ERP005899_muscle | 0 .00 RPM | 307 .02 RPM |
SRP017611_brain | 0 .00 RPM | 53 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 138 .22 RPM |
SRP017611_liver | 0 .00 RPM | 52 .78 RPM |
SRP030211_testis | 0 .00 RPM | 29 .04 RPM |