RetrogeneDB ID: | retro_ggor_1884 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:130297579..130298052(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSGGOG00000015641 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.16 % |
Parental protein coverage: | 79.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LLCSGSSSPATAPHP-LKMFACSKFVST-PSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSRPLT |
LL...S.....APHP.LKM..CSK.VST.P.LVKSTS.LLS..LSAVVLK.PE.LTDESLSSLAVS.PL. | |
Retrocopy | LLFTESNCVPKAPHP<LKMYTCSKCVST<PLLVKSTSHLLSCLLSAVVLK*PETLTDESLSSLAVSHPLI |
Parental | SLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGS-GAG-IGTVFGSLIIGYARNPSLKQQLFSYAILG |
SLV.S.SFQTSAISRDIDTAAKFIG.GAATVGVAGS.G.G..GTVFGS.IIGYAR.PSLKQQLF.Y.ILG | |
Retrocopy | SLVPSCSFQTSAISRDIDTAAKFIGVGAATVGVAGS>GLGLVGTVFGSIIIGYARKPSLKQQLF-YPILG |
Parental | FALSEAMGLFCLMVAFLILFAM |
FAL.E.MGLFCLM.A.LILFA. | |
Retrocopy | FALWEVMGLFCLMIAPLILFAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 116 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 115 .83 RPM |
SRP007412_heart | 0 .00 RPM | 147 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 140 .13 RPM |
SRP007412_liver | 0 .00 RPM | 117 .78 RPM |
SRP007412_testis | 0 .00 RPM | 62 .37 RPM |