Parental gene:

KRT18, ENSG00000111057

Aliases:KRT18, CYK18, K18
Description:keratin 18 [Source:HGNC Symbol;Acc:6430]
Organism:Human (Homo sapiens)
Coordinates:12:53342654..53346685(+)


>ENSG00000111057
ATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTCCCTGGGCTCTGTCCAGGCGCCCAGCTACGGCGCCCG
GCCGGTCAGCAGCGCGGCCAGCGTCTATGCAGGCGCTGGGGGCTCTGGTTCCCGGATCTCCGTGTCCCGCTCCACCAGCT
TCAGGGGCGGCATGGGGTCCGGGGGCCTGGCCACCGGGATAGCCGGGGGTCTGGCAGGAATGGGAGGCATCCAGAACGAG
AAGGAGACCATGCAAAGCCTGAACGACCGCCTGGCCTCTTACCTGGACAGAGTGAGGAGCCTGGAGACCGAGAACCGGAG
GCTGGAGAGCAAAATCCGGGAGCACTTGGAGAAGAAGGGACCCCAGGTCAGAGACTGGAGCCATTACTTCAAGATCATCG
AGGACCTGAGGGCTCAGATCTTCGCAAATACTGTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCCCGTCTTGCT
GCTGATGACTTTAGAGTCAAGTATGAGACAGAGCTGGCCATGCGCCAGTCTGTGGAGAACGACATCCATGGGCTCCGCAA
GGTCATTGATGACACCAATATCACACGACTGCAGCTGGAGACAGAGATCGAGGCTCTCAAGGAGGAGCTGCTCTTCATGA
AGAAGAACCACGAAGAGGAAGTAAAAGGCCTACAAGCCCAGATTGCCAGCTCTGGGTTGACCGTGGAGGTAGATGCCCCC
AAATCTCAGGACCTCGCCAAGATCATGGCAGACATCCGGGCCCAATATGACGAGCTGGCTCGGAAGAACCGAGAGGAGCT
AGACAAGTACTGGTCTCAGCAGATTGAGGAGAGCACCACAGTGGTCACCACACAGTCTGCTGAGGTTGGAGCTGCTGAGA
CGACGCTCACAGAGCTGAGACGTACAGTCCAGTCCTTGGAGATCGACCTGGACTCCATGAGAAATCTGAAGGCCAGCTTG
GAGAACAGCCTGAGGGAGGTGGAGGCCCGCTACGCCCTACAGATGGAGCAGCTCAACGGGATCCTGCTGCACCTTGAGTC
AGAGCTGGCACAGACCCGGGCAGAGGGACAGCGCCAGGCCCAGGAGTATGAGGCCCTGCTGAACATCAAGGTCAAGCTGG
AGGCTGAGATCGCCACCTACCGCCGCCTGCTGGAAGATGGCGAGGACTTTAATCTTGGTGATGCCTTGGACAGCAGCAAC
TCCATGCAAACCATCCAAAAGACCACCACCCGCCGGATAGTGGATGGCAAAGTGGTGTCTGAGACCAATGACACCAAAGT
TCTGAGGCATTAA

Library Parental gene expression (RPM)
bodymap2_liver 164 .76 RPM
bodymap2_lung 169 .64 RPM
bodymap2_breast 37 .70 RPM
bodymap2_adipose 8 .95 RPM
bodymap2_adrenal 10 .71 RPM
bodymap2_skeletal_muscle 1 .78 RPM
bodymap2_thyroid 148 .47 RPM
bodymap2_prostate 60 .43 RPM
bodymap2_colon 68 .51 RPM
bodymap2_testis 31 .33 RPM
bodymap2_brain 1 .24 RPM
bodymap2_heart 3 .58 RPM
bodymap2_white_blood_cells 1 .04 RPM
bodymap2_lymph_node 13 .65 RPM
bodymap2_ovary 43 .55 RPM
bodymap2_kidney 132 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011981 possible_ortholog 2 retrogenes
retro_amel_1366, retro_amel_1896,
Canis familiaris ENSCAFG00000007154 possible_ortholog 10 retrogenes
retro_cfam_1045, retro_cfam_1205, retro_cfam_1393, retro_cfam_1413, retro_cfam_1672, retro_cfam_2124, retro_cfam_2170, retro_cfam_611, retro_cfam_698, retro_cfam_883,
Callithrix jacchus ENSCJAG00000018165 ortholog_one2many 29 retrogenes
retro_cjac_1323, retro_cjac_1457, retro_cjac_1638, retro_cjac_1847, retro_cjac_1857, retro_cjac_1885, retro_cjac_1915, retro_cjac_2074, retro_cjac_2087, retro_cjac_2179, retro_cjac_2232, retro_cjac_2252, retro_cjac_2349, retro_cjac_2614, retro_cjac_2689, retro_cjac_2842, retro_cjac_3036, retro_cjac_3145, retro_cjac_3995, retro_cjac_4001, retro_cjac_4065, retro_cjac_4120, retro_cjac_4138, retro_cjac_4158, retro_cjac_4200, retro_cjac_626, retro_cjac_794, retro_cjac_878, retro_cjac_955,
Cavia porcellus ENSCPOG00000002618 possible_ortholog 1 retrogene
retro_cpor_111,
Gorilla gorilla ENSGGOG00000010157 ortholog_one2one 28 retrogenes
retro_ggor_1246, retro_ggor_1513, retro_ggor_1606, retro_ggor_1641, retro_ggor_1692, retro_ggor_1725, retro_ggor_1838, retro_ggor_1914, retro_ggor_2024, retro_ggor_2062, retro_ggor_2128, retro_ggor_2201, retro_ggor_2301, retro_ggor_2360, retro_ggor_2407, retro_ggor_2462, retro_ggor_2468, retro_ggor_2653, retro_ggor_2815, retro_ggor_2823, retro_ggor_2903, retro_ggor_2941, retro_ggor_3069, retro_ggor_455, retro_ggor_685, retro_ggor_692, retro_ggor_881, retro_ggor_898,
Macropus eugenii ENSMEUG00000012262 ortholog_one2one 14 retrogenes
retro_meug_1392, retro_meug_1430, retro_meug_1461, retro_meug_1467, retro_meug_1631, retro_meug_1651, retro_meug_1810, retro_meug_2024, retro_meug_2082, retro_meug_2132, retro_meug_323, retro_meug_425, retro_meug_575, retro_meug_771,
Myotis lucifugus ENSMLUG00000022439 possible_ortholog 8 retrogenes
retro_mluc_1247, retro_mluc_1248, retro_mluc_1758, retro_mluc_1876, retro_mluc_2179, retro_mluc_2234, retro_mluc_2420, retro_mluc_549,
Macaca mulatta ENSMMUG00000031911 ortholog_one2many 4 retrogenes
retro_mmul_1601, retro_mmul_279, retro_mmul_91, retro_mmul_948,
Mustela putorius furo ENSMPUG00000006369 possible_ortholog 2 retrogenes
retro_mputfur_1591, retro_mputfur_171,
Nomascus leucogenys ENSNLEG00000017732 ortholog_one2one 45 retrogenes
retro_nleu_1234, retro_nleu_1238, retro_nleu_1252, retro_nleu_1346, retro_nleu_1397, retro_nleu_1421, retro_nleu_1454, retro_nleu_1500, retro_nleu_1547, retro_nleu_1563, retro_nleu_1683, retro_nleu_1801, retro_nleu_1872, retro_nleu_1953, retro_nleu_1960, retro_nleu_2023, retro_nleu_2173, retro_nleu_2293, retro_nleu_2308, retro_nleu_2310, retro_nleu_241, retro_nleu_2494, retro_nleu_2551, retro_nleu_264, retro_nleu_2721, retro_nleu_2807, retro_nleu_2901, retro_nleu_2935, retro_nleu_3008, retro_nleu_3061, retro_nleu_353, retro_nleu_357, retro_nleu_364, retro_nleu_415, retro_nleu_427, retro_nleu_505, retro_nleu_512, retro_nleu_613, retro_nleu_639, retro_nleu_699, retro_nleu_785, retro_nleu_791, retro_nleu_824, retro_nleu_832, retro_nleu_924,
Oryctolagus cuniculus ENSOCUG00000027691 possible_ortholog 1 retrogene
retro_ocun_58,
Pongo abelii ENSPPYG00000004563 ortholog_one2one 60 retrogenes
retro_pabe_1020, retro_pabe_1130, retro_pabe_1161, retro_pabe_1399, retro_pabe_1486, retro_pabe_1487, retro_pabe_1522, retro_pabe_1552, retro_pabe_1628, retro_pabe_1751, retro_pabe_1809, retro_pabe_1852, retro_pabe_1870, retro_pabe_1890, retro_pabe_1893, retro_pabe_1942, retro_pabe_1966, retro_pabe_1991, retro_pabe_2060, retro_pabe_2128, retro_pabe_2134, retro_pabe_2145, retro_pabe_2174, retro_pabe_2278, retro_pabe_2335, retro_pabe_2359, retro_pabe_2376, retro_pabe_2381, retro_pabe_2427, retro_pabe_2431, retro_pabe_2465, retro_pabe_250, retro_pabe_2564, retro_pabe_2628, retro_pabe_2655, retro_pabe_2675, retro_pabe_2682, retro_pabe_2797, retro_pabe_2822, retro_pabe_2855, retro_pabe_2884, retro_pabe_2890, retro_pabe_290, retro_pabe_2992, retro_pabe_2998, retro_pabe_3252, retro_pabe_3400, retro_pabe_3401, retro_pabe_3437, retro_pabe_3448, retro_pabe_3464, retro_pabe_3488, retro_pabe_362, retro_pabe_3636, retro_pabe_3681, retro_pabe_3702, retro_pabe_374, retro_pabe_3824, retro_pabe_934, retro_pabe_956,
Pan troglodytes ENSPTRG00000004996 ortholog_one2one 58 retrogenes
retro_ptro_1121, retro_ptro_1172, retro_ptro_1188, retro_ptro_1251, retro_ptro_1321, retro_ptro_1405, retro_ptro_1420, retro_ptro_1462, retro_ptro_1482, retro_ptro_1496, retro_ptro_1501, retro_ptro_1586, retro_ptro_1610, retro_ptro_1659, retro_ptro_1721, retro_ptro_1725, retro_ptro_1737, retro_ptro_1772, retro_ptro_1860, retro_ptro_193, retro_ptro_1941, retro_ptro_1946, retro_ptro_1971, retro_ptro_1977, retro_ptro_2010, retro_ptro_2094, retro_ptro_2188, retro_ptro_2244, retro_ptro_2277, retro_ptro_2310, retro_ptro_2341, retro_ptro_2366, retro_ptro_2371, retro_ptro_247, retro_ptro_2470, retro_ptro_2476, retro_ptro_264, retro_ptro_2679, retro_ptro_2817, retro_ptro_2852, retro_ptro_2861, retro_ptro_2881, retro_ptro_2900, retro_ptro_2956, retro_ptro_3079, retro_ptro_3110, retro_ptro_3144, retro_ptro_3150, retro_ptro_3169, retro_ptro_3277, retro_ptro_364, retro_ptro_581, retro_ptro_587, retro_ptro_600, retro_ptro_677, retro_ptro_787, retro_ptro_841, retro_ptro_962,
Rattus norvegicus ENSRNOG00000047393 possible_ortholog 3 retrogenes
retro_rnor_1513, retro_rnor_2529, retro_rnor_581,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_306 81.74 50.70
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2. retro_hsap_327 84.03 100.00
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3. retro_hsap_434 82.78 63.26
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4. retro_hsap_483 81.44 100.00
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5. retro_hsap_832 73.42 87.91
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6. retro_hsap_846 84.10 99.77
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7. retro_hsap_866 83.98 95.35
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8. retro_hsap_1129 80.14 97.67
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9. retro_hsap_1153 85.88 100.00
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10. retro_hsap_1226 85.94 73.72
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11. retro_hsap_1404 77.17 79.77
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12. retro_hsap_1650 85.12 99.77
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13. retro_hsap_1774 79.94 78.60
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14. retro_hsap_1818 79.95 99.53
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15. retro_hsap_1907 84.23 55.81
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16. retro_hsap_1981 81.75 63.26
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17. retro_hsap_2115 83.33 76.47
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18. retro_hsap_2174 73.95 88.14
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19. retro_hsap_2242 84.44 59.53
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20. retro_hsap_2276 82.58 77.44
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21. retro_hsap_2353 81.71 100.00
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22. retro_hsap_2361 79.84 56.28
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23. retro_hsap_2433 83.45 68.60
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24. retro_hsap_2461 85.59 53.26
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25. retro_hsap_2517 79.90 93.26
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26. retro_hsap_2543 75.58 100.00
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27. retro_hsap_2565 83.41 100.00
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28. retro_hsap_2571 85.19 100.00
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29. retro_hsap_2626 82.50 83.49
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30. retro_hsap_2752 85.79 83.02
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31. retro_hsap_2848 82.73 76.74
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32. retro_hsap_2869 88.21 53.02
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33. retro_hsap_2877 78.01 100.00
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34. retro_hsap_2915 81.27 69.30
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35. retro_hsap_2922 83.99 88.37
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36. retro_hsap_2973 83.72 100.00
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37. retro_hsap_3098 80.40 57.67
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38. retro_hsap_3161 84.01 81.59
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39. retro_hsap_3203 78.12 81.63
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40. retro_hsap_3227 84.12 78.60
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41. retro_hsap_3236 82.66 74.88
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42. retro_hsap_3400 83.90 74.88
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43. retro_hsap_3452 77.22 54.19
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44. retro_hsap_3492 82.18 92.56
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45. retro_hsap_3498 71.37 53.02
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46. retro_hsap_3567 86.23 63.95
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47. retro_hsap_3645 86.54 100.00
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48. retro_hsap_3651 84.33 100.00
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49. retro_hsap_3948 80.13 68.60
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50. retro_hsap_4145 80.63 51.16
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51. retro_hsap_4201 77.33 51.63
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52. retro_hsap_4215 77.14 91.63
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53. retro_hsap_4238 82.91 100.00
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54. retro_hsap_4277 80.82 50.93
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55. retro_hsap_4681 87.24 85.93
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56. retro_hsap_4727 90.51 100.00
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57. retro_hsap_4736 83.51 64.42
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58. retro_hsap_4756 76.91 100.00
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59. retro_hsap_4915 87.15 72.89
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60. retro_hsap_4919 91.44 100.00
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Download FASTA sequences of all ENSG00000111057 retrocopies