Parental gene:

KRT18, ENSPTRG00000004996

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:36326834..36330677(-)


>ENSPTRG00000004996
ATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTCCCTGGGCTCTGTCCAGGCGCCCAGCTACGGCGCCCG
GCCGGTCAGCAGCGCGGCCAGCGTCTATGCAGGCGCTGGGGGCTCTGGTTCCCGGATCTCCGTGTCCCGCTCCACCAGCT
TCAGGGGCGGCATGGGGTCCGGGGGCCTGGCCACGGGGATAGCCGGGGGTCTGGCAGGAATGGGAGGCATCCAGAACGAG
AAGGAGACCATGCAAAGCCTGAACGACCGCCTGGCCTCTTACCTGGACAGAGTGAGGAGCCTGGAGACCGAGAACCGGAG
GCTGGAGAGCAAAATCCGGGAGCACTTGGAGAAGAAGGGACCCCAGGTCAGAGACTGGAGCCATTACTTCAAGATCATCG
AGGACCTGAGGGCTCAGATCTTCGCAAATACTGTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCCCGTCTTGCT
GCTGATGACTTTAGAGTCAAGTATGAGACAGAGCTGGCCATGCGCCAGTCTGTGGAGAACGACATCCATGGGCTCCGCAA
GGTCATTGATGACACCAATATCACACGACTGCAGCTGGAGACAGAGATCGAGGCTCTCAAGGAGGAGCTGCTCTTCATGA
AGAAGAACCACGAAGAGGAAGTAAAAGGCCTACAAGCCCAGATTGCCAGCTCTGGGTTGACCGTGGAGGTAGATGCCCCC
AAATCTCAGGACCTCGCCAAGATCATGGCAGACATCCGGGCCCAATATGACGAGCTGGCTCGGAAGAACCGAGAGGAGCT
AGACAAGTACTGGTCTCAGCAGATTGAGGAGAGCACCACAGTGGTCACCACACAGTCTGCTGAGGTTGGAGCTGCTGAGA
CGACGCTCACAGAGCTGAGACGTACAGTCCAGTCCTTGGAGATCGACCTGGACTCCATGAGAAATCTGAAGGCCAGCTTG
GAGAACAGCCTGAGGGAGGTGGAGGCCCGCTACGCCCTACAGATGGAGCAGCTCAACGGGATCCTGCTGCACCTTGAGTC
AGAGCTGGCACAGACCCGGGCAGAGGGACAGCGCCAGGCCCAGGAGTATGAGGCCCTGCTGAACATCAAGGTCAAGCTGG
AGGCTGAGATCGCCACCTACCGCCGCCTGCTGGAAGATGGCGAGGACTTTAATCTTGGTGATGCCTTGGACAGCAGCAAC
TCCATGCAAACCATCCAAAAGACCACCACCCGCCGGATAGTGGATGGCAAAGTGGTGTCTGAGACCAATGACACCAAAGT
TCTGAGGCATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .34 RPM
SRP007412_cerebellum 3 .69 RPM
SRP007412_heart 1 .63 RPM
SRP007412_kidney 148 .80 RPM
SRP007412_liver 385 .90 RPM
SRP007412_testis 1 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011981 possible_ortholog 2 retrogenes
retro_amel_1366, retro_amel_1896,
Canis familiaris ENSCAFG00000007154 possible_ortholog 10 retrogenes
retro_cfam_1045, retro_cfam_1205, retro_cfam_1393, retro_cfam_1413, retro_cfam_1672, retro_cfam_2124, retro_cfam_2170, retro_cfam_611, retro_cfam_698, retro_cfam_883,
Callithrix jacchus ENSCJAG00000018165 ortholog_one2many 29 retrogenes
retro_cjac_1323, retro_cjac_1457, retro_cjac_1638, retro_cjac_1847, retro_cjac_1857, retro_cjac_1885, retro_cjac_1915, retro_cjac_2074, retro_cjac_2087, retro_cjac_2179, retro_cjac_2232, retro_cjac_2252, retro_cjac_2349, retro_cjac_2614, retro_cjac_2689, retro_cjac_2842, retro_cjac_3036, retro_cjac_3145, retro_cjac_3995, retro_cjac_4001, retro_cjac_4065, retro_cjac_4120, retro_cjac_4138, retro_cjac_4158, retro_cjac_4200, retro_cjac_626, retro_cjac_794, retro_cjac_878, retro_cjac_955,
Cavia porcellus ENSCPOG00000002618 possible_ortholog 1 retrogene
retro_cpor_111,
Homo sapiens ENSG00000111057 ortholog_one2one 60 retrogenes
retro_hsap_1129, retro_hsap_1153, retro_hsap_1226, retro_hsap_1404, retro_hsap_1650, retro_hsap_1774, retro_hsap_1818, retro_hsap_1907, retro_hsap_1981, retro_hsap_2115, retro_hsap_2174, retro_hsap_2242, retro_hsap_2276, retro_hsap_2353, retro_hsap_2361, retro_hsap_2433, retro_hsap_2461, retro_hsap_2517, retro_hsap_2543, retro_hsap_2565, retro_hsap_2571, retro_hsap_2626, retro_hsap_2752, retro_hsap_2848, retro_hsap_2869, retro_hsap_2877, retro_hsap_2915, retro_hsap_2922, retro_hsap_2973, retro_hsap_306, retro_hsap_3098, retro_hsap_3161, retro_hsap_3203, retro_hsap_3227, retro_hsap_3236, retro_hsap_327, retro_hsap_3400, retro_hsap_3452, retro_hsap_3492, retro_hsap_3498, retro_hsap_3567, retro_hsap_3645, retro_hsap_3651, retro_hsap_3948, retro_hsap_4145, retro_hsap_4201, retro_hsap_4215, retro_hsap_4238, retro_hsap_4277, retro_hsap_434, retro_hsap_4681, retro_hsap_4727, retro_hsap_4736, retro_hsap_4756, retro_hsap_483, retro_hsap_4915, retro_hsap_4919, retro_hsap_832, retro_hsap_846, retro_hsap_866,
Gorilla gorilla ENSGGOG00000010157 ortholog_one2one 28 retrogenes
retro_ggor_1246, retro_ggor_1513, retro_ggor_1606, retro_ggor_1641, retro_ggor_1692, retro_ggor_1725, retro_ggor_1838, retro_ggor_1914, retro_ggor_2024, retro_ggor_2062, retro_ggor_2128, retro_ggor_2201, retro_ggor_2301, retro_ggor_2360, retro_ggor_2407, retro_ggor_2462, retro_ggor_2468, retro_ggor_2653, retro_ggor_2815, retro_ggor_2823, retro_ggor_2903, retro_ggor_2941, retro_ggor_3069, retro_ggor_455, retro_ggor_685, retro_ggor_692, retro_ggor_881, retro_ggor_898,
Macropus eugenii ENSMEUG00000012262 ortholog_one2one 14 retrogenes
retro_meug_1392, retro_meug_1430, retro_meug_1461, retro_meug_1467, retro_meug_1631, retro_meug_1651, retro_meug_1810, retro_meug_2024, retro_meug_2082, retro_meug_2132, retro_meug_323, retro_meug_425, retro_meug_575, retro_meug_771,
Myotis lucifugus ENSMLUG00000022439 possible_ortholog 8 retrogenes
retro_mluc_1247, retro_mluc_1248, retro_mluc_1758, retro_mluc_1876, retro_mluc_2179, retro_mluc_2234, retro_mluc_2420, retro_mluc_549,
Macaca mulatta ENSMMUG00000031911 ortholog_one2many 4 retrogenes
retro_mmul_1601, retro_mmul_279, retro_mmul_91, retro_mmul_948,
Mustela putorius furo ENSMPUG00000006369 possible_ortholog 2 retrogenes
retro_mputfur_1591, retro_mputfur_171,
Nomascus leucogenys ENSNLEG00000017732 ortholog_one2one 45 retrogenes
retro_nleu_1234, retro_nleu_1238, retro_nleu_1252, retro_nleu_1346, retro_nleu_1397, retro_nleu_1421, retro_nleu_1454, retro_nleu_1500, retro_nleu_1547, retro_nleu_1563, retro_nleu_1683, retro_nleu_1801, retro_nleu_1872, retro_nleu_1953, retro_nleu_1960, retro_nleu_2023, retro_nleu_2173, retro_nleu_2293, retro_nleu_2308, retro_nleu_2310, retro_nleu_241, retro_nleu_2494, retro_nleu_2551, retro_nleu_264, retro_nleu_2721, retro_nleu_2807, retro_nleu_2901, retro_nleu_2935, retro_nleu_3008, retro_nleu_3061, retro_nleu_353, retro_nleu_357, retro_nleu_364, retro_nleu_415, retro_nleu_427, retro_nleu_505, retro_nleu_512, retro_nleu_613, retro_nleu_639, retro_nleu_699, retro_nleu_785, retro_nleu_791, retro_nleu_824, retro_nleu_832, retro_nleu_924,
Oryctolagus cuniculus ENSOCUG00000027691 possible_ortholog 1 retrogene
retro_ocun_58,
Pongo abelii ENSPPYG00000004563 ortholog_one2one 60 retrogenes
retro_pabe_1020, retro_pabe_1130, retro_pabe_1161, retro_pabe_1399, retro_pabe_1486, retro_pabe_1487, retro_pabe_1522, retro_pabe_1552, retro_pabe_1628, retro_pabe_1751, retro_pabe_1809, retro_pabe_1852, retro_pabe_1870, retro_pabe_1890, retro_pabe_1893, retro_pabe_1942, retro_pabe_1966, retro_pabe_1991, retro_pabe_2060, retro_pabe_2128, retro_pabe_2134, retro_pabe_2145, retro_pabe_2174, retro_pabe_2278, retro_pabe_2335, retro_pabe_2359, retro_pabe_2376, retro_pabe_2381, retro_pabe_2427, retro_pabe_2431, retro_pabe_2465, retro_pabe_250, retro_pabe_2564, retro_pabe_2628, retro_pabe_2655, retro_pabe_2675, retro_pabe_2682, retro_pabe_2797, retro_pabe_2822, retro_pabe_2855, retro_pabe_2884, retro_pabe_2890, retro_pabe_290, retro_pabe_2992, retro_pabe_2998, retro_pabe_3252, retro_pabe_3400, retro_pabe_3401, retro_pabe_3437, retro_pabe_3448, retro_pabe_3464, retro_pabe_3488, retro_pabe_362, retro_pabe_3636, retro_pabe_3681, retro_pabe_3702, retro_pabe_374, retro_pabe_3824, retro_pabe_934, retro_pabe_956,
Rattus norvegicus ENSRNOG00000047393 possible_ortholog 3 retrogenes
retro_rnor_1513, retro_rnor_2529, retro_rnor_581,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_193 83.15 63.26
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2. retro_ptro_247 81.28 50.70
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3. retro_ptro_264 82.41 100.00
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4. retro_ptro_364 85.15 100.00
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5. retro_ptro_581 74.21 87.91
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6. retro_ptro_587 84.10 99.77
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7. retro_ptro_600 86.17 95.35
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8. retro_ptro_677 79.91 97.67
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9. retro_ptro_787 86.31 99.77
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10. retro_ptro_841 83.18 73.72
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11. retro_ptro_962 77.17 79.77
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12. retro_ptro_1121 84.88 99.77
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13. retro_ptro_1172 80.41 99.53
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14. retro_ptro_1188 78.47 78.60
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15. retro_ptro_1251 82.16 55.81
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16. retro_ptro_1321 82.85 63.49
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17. retro_ptro_1405 79.40 100.00
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18. retro_ptro_1420 84.35 53.26
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19. retro_ptro_1462 80.51 90.47
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20. retro_ptro_1482 75.81 100.00
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21. retro_ptro_1496 84.63 100.00
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22. retro_ptro_1501 82.64 100.00
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23. retro_ptro_1586 85.16 95.12
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24. retro_ptro_1610 83.48 77.44
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25. retro_ptro_1659 73.02 58.60
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26. retro_ptro_1721 80.32 100.00
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27. retro_ptro_1725 79.46 51.86
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28. retro_ptro_1737 80.65 50.23
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29. retro_ptro_1772 87.35 74.88
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30. retro_ptro_1860 85.79 83.02
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31. retro_ptro_1941 88.70 53.26
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32. retro_ptro_1946 79.17 100.00
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33. retro_ptro_1971 80.94 69.30
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34. retro_ptro_1977 85.30 88.37
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35. retro_ptro_2010 77.64 56.98
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36. retro_ptro_2094 80.40 57.67
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37. retro_ptro_2188 81.73 74.88
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38. retro_ptro_2244 77.78 81.40
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39. retro_ptro_2277 83.07 74.19
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40. retro_ptro_2310 83.59 74.88
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41. retro_ptro_2341 78.48 54.19
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42. retro_ptro_2366 78.93 72.79
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43. retro_ptro_2371 70.51 53.02
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44. retro_ptro_2470 85.85 100.00
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45. retro_ptro_2476 84.79 100.00
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46. retro_ptro_2679 79.19 68.60
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47. retro_ptro_2817 81.53 51.16
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48. retro_ptro_2852 76.44 51.63
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49. retro_ptro_2861 77.14 91.63
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50. retro_ptro_2881 82.91 100.00
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51. retro_ptro_2900 81.44 100.00
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52. retro_ptro_2956 82.43 51.40
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53. retro_ptro_3079 87.04 74.88
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54. retro_ptro_3110 87.20 78.14
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55. retro_ptro_3144 85.15 100.00
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56. retro_ptro_3150 84.23 64.42
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57. retro_ptro_3169 77.37 100.00
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58. retro_ptro_3277 86.81 66.28
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Download FASTA sequences of all ENSPTRG00000004996 retrocopies