RetrogeneDB ID: | retro_nleu_264 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397262.1:58530749..58531767(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSNLEG00000017732 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.64 % |
Parental protein coverage: | 78.84 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLAAGIAG- |
MSFT..ST.ST.Y.SL.S.Q..S...R..SS.A.VYAG..G.GSR.SVS.STSF.GG.GSGGLAAG..G. | |
Retrocopy | MSFTICSTTSTSYQSLHSIQPHSHSVRFISSTAKVYAGLRGLGSRTSVSFSTSFWGGWGSGGLAAGMPG< |
Parental | GLAGVGGIQNEKETMQSLNDRLA-SYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRA |
GL.G.G.IQNEK.T.Q.LND.LA.SYLD.VR.L.TE..RL.SKI.E.LEKK....R.W.H.F..I.DLRA | |
Retrocopy | GLEGMGDIQNEKDTIQGLNDCLA>SYLDKVRTLVTESQRLVSKI*ENLEKKRSHIRAWGHDFMTIKDLRA |
Parental | QIFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKE |
.IFAN.VDNA..VLQIDNARLAAD.FRVKY..ELA..QSVE..IHGL.K..DDTNVTRLQLETE.EALKE | |
Retrocopy | HIFANSVDNACVVLQIDNARLAADGFRVKYKMELAICQSVESNIHGLHKLTDDTNVTRLQLETEMEALKE |
Parental | ELLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEES |
ELLFMKKN.E.EVKGLQA.IASS.LT.EV.APKSQ.L.KIMAD..AQYDELA.KN.EELDKYWSQ..EE. | |
Retrocopy | ELLFMKKNQEKEVKGLQALIASSELTMEVNAPKSQYLSKIMADLPAQYDELAQKN*EELDKYWSQKTEEH |
Parental | TTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLR-EVEARYALQMEQLN |
TTVVTTQS...GAAE.T..ELR..VQSLEI.LDSMRNLKASLEN.LR..V.ARYA.QMEQL. | |
Retrocopy | TTVVTTQSTKIGAAEMTFMELRCIVQSLEINLDSMRNLKASLENRLR>GVQARYAMQMEQLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |