RetrogeneDB ID: | retro_ptro_1462 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 21:6862687..6863850(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPTRG00000004996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.51 % |
Parental protein coverage: | 90.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SGSRISVSRSTSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESK |
SGSRI.VS.STSFR.G.GS...A...AG.LAGMGGIQN..ETMQSLN..LASYLDRVRSLETEN..LESK | |
Retrocopy | SGSRILVSCSTSFRVGLGSKVPAA*MAGVLAGMGGIQNA-ETMQSLNNWLASYLDRVRSLETENWKLESK |
Parental | IREHLEKKGPQVRDWSHYFKIIEDLRAQIFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVEND |
I.E.LEKKGPQVRDW.HYFK.IEDL.A.IFANTVD...IVLQIDNAR.AA.DFRV.YE.ELAM.QSV... | |
Retrocopy | IPEPLEKKGPQVRDWGHYFKTIEDLSAHIFANTVDSSCIVLQIDNARIAANDFRVTYESELAMHQSVKSN |
Parental | IHGLRKVIDDTNITRLQLETEIEALKEELLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMAD |
I.GL.K..DDTN.T.LQLETE.EALKEELLFMKKNHEEEVKGLQAQIASSGLTVEVDA.K.QDL.KIM.D | |
Retrocopy | IRGLHKIADDTNVTQLQLETEMEALKEELLFMKKNHEEEVKGLQAQIASSGLTVEVDALKLQDLTKIMVD |
Parental | IRAQYDELARKNREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLE |
I.AQYDELARKNREELD.Y.S..IEESTTVVTTQ..EVGAAE..L.E.R.TVQSLEIDLDSMRNLKASLE | |
Retrocopy | IQAQYDELARKNREELDMY*SRLIEESTTVVTTQFIEVGAAEMILMEMRHTVQSLEIDLDSMRNLKASLE |
Parental | NSLREVEARYALQMEQLNGILLHLESELAQTRAEGQRQAQEYEALLNI-KVKLEAEIATYRRLLEDGEDF |
NSL.EVEARYALQMEQLNG....LESEL.QT.AEGQ.QAQE.EALLNI.KVKLEAEIATY..LLEDGEDF | |
Retrocopy | NSLKEVEARYALQMEQLNGTMMYLESELPQTWAEGQHQAQEWEALLNI<KVKLEAEIATYHPLLEDGEDF |
Parental | NLGDALDSSNSMQTIQKTTTRRIVDGKVVSETNDTKVLRH |
NLG.ALDSSNSMQTIQKT.T...VDGKVVS.TNDT.VLRH | |
Retrocopy | NLGNALDSSNSMQTIQKTATCQTVDGKVVSGTNDTEVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .69 RPM |
SRP007412_heart | 0 .00 RPM | 1 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 148 .80 RPM |
SRP007412_liver | 0 .00 RPM | 385 .90 RPM |
SRP007412_testis | 0 .00 RPM | 1 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2517 |
Pongo abelii | retro_pabe_1852 |