RetrogeneDB ID: | retro_hsap_483 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:182928211..182929497(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000176855 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSG00000111057 | ||
Aliases: | KRT18, CYK18, K18 | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 81.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAGG |
M.FTTRST.STNY.SLGSVQAPSYG..PVSS.ASVYAG.GGSGS.IS.SRSTSF.GGMGSGGLA.G.AGG | |
Retrocopy | MNFTTRST-STNYQSLGSVQAPSYGPPPVSSTASVYAGVGGSGSQISMSRSTSFQGGMGSGGLAAGMAGG |
Parental | LAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGP-QVRDWSHYFKIIEDLRAQ |
LA.MGGIQNEKE.MQSLN..LA.YLDRV.................LEKKGP.QVRDWSHYFK.I.DLRAQ | |
Retrocopy | LAEMGGIQNEKEPMQSLNHHLAFYLDRVXXXXXXXXXXXXXXXXXLEKKGP<QVRDWSHYFKTIKDLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEE |
IFANTVDNA..VLQIDNA.LAADDFRVKYETELAMRQSVE.DI.GLRK.IDDT..TRLQLETEIEALKEE | |
Retrocopy | IFANTVDNACTVLQIDNAHLAADDFRVKYETELAMRQSVESDIQGLRKAIDDTSVTRLQLETEIEALKEE |
Parental | LLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEEST |
LLFMKKNHEEEVKG.QAQI.SSGLT.EVDA.KSQDLAKIMADI..QYDELA.KN.EEL.KYWSQQI.E.T | |
Retrocopy | LLFMKKNHEEEVKGRQAQIVSSGLTLEVDALKSQDLAKIMADIWTQYDELAWKNQEELGKYWSQQIKERT |
Parental | TVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESEL |
TVVT.QS.EVG.AE.TL.ELR.TVQSLEI.LD..RNLK.SLENSLRE.EA...LQMEQLNGILLHLESEL | |
Retrocopy | TVVTMQSTEVGVAEMTLMELRHTVQSLEINLDFIRNLKPSLENSLREAEAHCTLQMEQLNGILLHLESEL |
Parental | AQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSNSMQTIQKTTTRRIVDGKVV |
AQT.AEGQRQAQEYEALLNIKVKLEAEI.TY..LLEDG.DFNLGD.LD.S.S.QTIQKTTTR.IVDGKVV | |
Retrocopy | AQTWAEGQRQAQEYEALLNIKVKLEAEITTYCGLLEDGKDFNLGDTLDRSKSVQTIQKTTTRWIVDGKVV |
Parental | SETNDTKVLRH |
SETNDTKVLRH | |
Retrocopy | SETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 8 .95 RPM |
bodymap2_adrenal | 0 .00 RPM | 10 .71 RPM |
bodymap2_brain | 0 .00 RPM | 1 .24 RPM |
bodymap2_breast | 0 .00 RPM | 37 .70 RPM |
bodymap2_colon | 0 .00 RPM | 68 .51 RPM |
bodymap2_heart | 0 .00 RPM | 3 .58 RPM |
bodymap2_kidney | 0 .00 RPM | 132 .71 RPM |
bodymap2_liver | 0 .00 RPM | 164 .76 RPM |
bodymap2_lung | 0 .02 RPM | 169 .64 RPM |
bodymap2_lymph_node | 0 .00 RPM | 13 .65 RPM |
bodymap2_ovary | 0 .00 RPM | 43 .55 RPM |
bodymap2_prostate | 0 .02 RPM | 60 .43 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .78 RPM |
bodymap2_testis | 0 .41 RPM | 31 .33 RPM |
bodymap2_thyroid | 0 .00 RPM | 148 .47 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_364 |
Gorilla gorilla | retro_ggor_455 |
Pongo abelii | retro_pabe_250 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |