RetrogeneDB ID: | retro_hsap_832 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:124983465..124984599(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000187686 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSG00000111057 | ||
Aliases: | KRT18, CYK18, K18 | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 73.42 % |
Parental protein coverage: | 87.91 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAG- |
MSFT...T.STNY.SL.S.Q..S......SS.A.VYA...G.GSR.SVS.STSF..G.GSGGLA.G..G. | |
Retrocopy | MSFTICFTTSTNYQSLHSIQPHSHSVQFISSTAKVYAVLRGLGSRTSVSFSTSFWSGWGSGGLAAGMPG< |
Parental | GLAGMGGIQNEKETMQSLNDRL-ASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRA |
GL.GMG.IQNEK.TMQ.LND.L..SYLDRVR.L.T...RL.SKI.EHLEKK.PQVR.W.HYF..I.DLRA | |
Retrocopy | GLEGMGYIQNEKDTMQGLNDCL>ISYLDRVRTLVTKSQRLVSKI*EHLEKKRPQVRAWGHYFMTIKDLRA |
Parental | QIFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKE |
.IFAN.VDNA..VLQIDNARLAADDFRVKY.TEL.M..SVE....GL.KV.DDTN.TRLQLETE.EALKE | |
Retrocopy | HIFANSVDNACVVLQIDNARLAADDFRVKYKTELVMCLSVESNVRGLHKVTDDTNVTRLQLETEMEALKE |
Parental | ELLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEES |
ELLFMKKN.E.EVKGLQA.IASS.LT.EV.APKSQDL..IMAD..AQYDELA.KN.EELDKYWSQ..EE. | |
Retrocopy | ELLFMKKNQEKEVKGLQALIASSELTMEVNAPKSQDLSNIMADLPAQYDELAQKN*EELDKYWSQKTEEH |
Parental | TTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESE |
TTVVTTQS...GAAETT..ELR..VQS.EI.LDSMRNLKASLENSLR.VEARYA.QMEQL.G..LHL.SE | |
Retrocopy | TTVVTTQSTKIGAAETTFMELRCIVQS*EINLDSMRNLKASLENSLRWVEARYAMQMEQLSGAVLHLDSE |
Parental | LAQTRAEGQRQAQEYEALLNIKVKLEAEIA |
LAQ..AEGQ.QAQ.YEALLNIKVK.EAEIA | |
Retrocopy | LAQAQAEGQHQAQKYEALLNIKVKREAEIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .12 RPM | 8 .95 RPM |
bodymap2_adrenal | 0 .00 RPM | 10 .71 RPM |
bodymap2_brain | 0 .05 RPM | 1 .24 RPM |
bodymap2_breast | 0 .12 RPM | 37 .70 RPM |
bodymap2_colon | 0 .12 RPM | 68 .51 RPM |
bodymap2_heart | 0 .11 RPM | 3 .58 RPM |
bodymap2_kidney | 0 .00 RPM | 132 .71 RPM |
bodymap2_liver | 0 .11 RPM | 164 .76 RPM |
bodymap2_lung | 0 .00 RPM | 169 .64 RPM |
bodymap2_lymph_node | 0 .07 RPM | 13 .65 RPM |
bodymap2_ovary | 0 .00 RPM | 43 .55 RPM |
bodymap2_prostate | 0 .03 RPM | 60 .43 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .78 RPM |
bodymap2_testis | 2 .26 RPM | 31 .33 RPM |
bodymap2_thyroid | 0 .15 RPM | 148 .47 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_581 |
Gorilla gorilla | retro_ggor_685 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .27 RPM |
CEU_NA12760 | 0 .18 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .13 RPM |
FIN_HG00183 | 0 .14 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .11 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .06 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .11 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .14 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .10 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .11 RPM |
GBR_HG00143 | 0 .13 RPM |
TSI_NA20512 | 0 .08 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .11 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .13 RPM |
TSI_NA20798 | 0 .09 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .17 RPM |
YRI_NA18916 | 0 .13 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .05 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .12 RPM |
YRI_NA19223 | 0 .04 RPM |