RetrogeneDB ID: | retro_ptro_1188 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 17:59557432..59558447(+) | ||
Located in intron of: | ENSPTRG00000009488 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPTRG00000004996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.47 % |
Parental protein coverage: | 78.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSFTTRSTFST-NYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAG |
MSFTT.STFST.NYRSLGSVQAPSYG..PVSS.ASV.AG.GGSGS.ISVS.ST.F.GGMGS.GL..G.AG | |
Retrocopy | MSFTTCSTFST>NYRSLGSVQAPSYGTQPVSSVASVCAGTGGSGSQISVSHSTNFWGGMGSRGLVVGMAG |
Parental | GLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
GLAG..GIQNEKETMQSL.D.LAS.LDR.RS...............LEKKGPQVRDWSHYFK.IEDLRAQ | |
Retrocopy | GLAGLRGIQNEKETMQSLDDCLASCLDRARSXXXXXXXXXXXXXXXLEKKGPQVRDWSHYFKTIEDLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEE |
IF.NTVD.A.IVLQI..A..AADDFRVKYETELAM..SVE.DIHGLRKV.DDTN.T.LQLETEI.ALKEE | |
Retrocopy | IFPNTVDSAGIVLQINSACVAADDFRVKYETELAMP*SVERDIHGLRKVTDDTNVTQLQLETEIKALKEE |
Parental | LLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEEST |
LLF.KKN.EEEVK.LQAQ.ASSGLT.EVDAPKSQDL.KIMADI.AQYDELA.KN.EELDKY.SQQIEEST | |
Retrocopy | LLFLKKNLEEEVKVLQAQTASSGLTMEVDAPKSQDLTKIMADIWAQYDELAQKNQEELDKY*SQQIEEST |
Parental | TVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQL |
TVVT.QSAEVGAAE..L.ELR.TVQSL.IDLD.MRNLKASL.NSLREVEA.Y.LQM.Q. | |
Retrocopy | TVVTMQSAEVGAAELMLMELRHTVQSLDIDLDCMRNLKASLQNSLREVEAHYTLQMGQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 0 .34 RPM |
SRP007412_cerebellum | 0 .07 RPM | 3 .69 RPM |
SRP007412_heart | 0 .03 RPM | 1 .63 RPM |
SRP007412_kidney | 0 .08 RPM | 148 .80 RPM |
SRP007412_liver | 0 .00 RPM | 385 .90 RPM |
SRP007412_testis | 0 .00 RPM | 1 .26 RPM |