RetrogeneDB ID: | retro_ptro_3079 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | GL394017.1:172..1136(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPTRG00000004996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.04 % |
Parental protein coverage: | 74.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ESKIREHLEKKGPQVRDWS-HYFKIIEDLRAQIFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQS |
E....E....KGPQVR....HYFK.I.DLRAQIF.NTVDNARIVLQIDNA.LAADDFRVKYETELAM.QS | |
Retrocopy | EPEAGEQNPRKGPQVRYCA<HYFKTIKDLRAQIFSNTVDNARIVLQIDNACLAADDFRVKYETELAMCQS |
Parental | VENDIHGLRKVIDDTNITRLQLETEIEALKEELLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAK |
.ENDIHGL.KVIDDTN.T.LQLETEIEALKEELLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAK | |
Retrocopy | LENDIHGLFKVIDDTNVTQLQLETEIEALKEELLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAK |
Parental | IMADIRAQYDELARKNREELDKYWSQQIEE-STTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNL |
IMADI.AQYDELARKN.E.LDKYWSQQIEE..TTVVTTQ.A.VGAAE..LTELRR.VQSLEIDLDSMRN. | |
Retrocopy | IMADIQAQYDELARKN*EGLDKYWSQQIEE<ETTVVTTQTAKVGAAEMPLTELRRAVQSLEIDLDSMRNV |
Parental | KASLENSLREVEARYALQMEQLNGILLHLESELAQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLED |
KASLENSLREVEARY.LQ.EQLNGILLHLESELA.T.AEGQ.QAQEY.ALLNIKVKLEAEIA.Y.RLLED | |
Retrocopy | KASLENSLREVEARYTLQIEQLNGILLHLESELALTQAEGQHQAQEYKALLNIKVKLEAEIASYHRLLED |
Parental | GEDFNLGDALDSSNSMQTIQKTTTRRIVDGKVVSETNDTKVLRH |
GEDFNLGDALDSSNSMQTIQKTTT.R.VDGKVVSETNDTKVLRH | |
Retrocopy | GEDFNLGDALDSSNSMQTIQKTTTCRRVDGKVVSETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .69 RPM |
SRP007412_heart | 0 .00 RPM | 1 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 148 .80 RPM |
SRP007412_liver | 0 .03 RPM | 385 .90 RPM |
SRP007412_testis | 0 .00 RPM | 1 .26 RPM |