RetrogeneDB ID: | retro_ptro_2371 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 6:96870127..96870807(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPTRG00000004996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.51 % |
Parental protein coverage: | 53.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EIEALKEELLFMKKNH-EEEVK-GLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELD- |
.I.ALKEELLFMKKNH.EE..K..L.AQ.A.SGLT.EVD.PKSQD..KI.AD...Q.DELA.K..EEL.. | |
Retrocopy | QISALKEELLFMKKNHKEEKTK>DLKAQFARSGLTIEVDVPKSQDPSKILAD---QCDELAQKKLEELE< |
Parental | KYWSQQIEESTTVVTTQ-SAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQ |
KYWSQQIE.STT.V.T..S.........LTELR..VQSLEI.LDSMRNLK.SLENS.REV.A..A.QMEQ | |
Retrocopy | KYWSQQIEDSTT-VLTM>SCQNQKCKVMLTELRGRVQSLEINLDSMRNLKTSLENSPREVDAHNAMQMEQ |
Parental | LNGILLHLESELAQTRAEGQRQAQEYE-ALLNIKVKLEAEIAT-YRRLLEDGEDFNLGDALDSSNSMQTI |
LNG.LLHLESELAQT.AEG.RQAQ.YE..LLNIKVKL.A..AT.Y..LLEDG.DFN.GDALDSSN.MQ.. | |
Retrocopy | LNGVLLHLESELAQTLAEGWRQAQVYEQGLLNIKVKLSAKLAT>YCCLLEDGRDFNPGDALDSSNPMQAF |
Parental | QKTTTRRIVDGKVVSETNDTKVLR |
.KTTT.RIVDGK..S.TNDTKVLR | |
Retrocopy | *KTTTCRIVDGKAASPTNDTKVLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .69 RPM |
SRP007412_heart | 0 .00 RPM | 1 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 148 .80 RPM |
SRP007412_liver | 0 .00 RPM | 385 .90 RPM |
SRP007412_testis | 0 .00 RPM | 1 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3498 |
Pongo abelii | retro_pabe_2890 |