RetrogeneDB ID: | retro_ptro_1172 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 17:28818385..28819669(+) | ||
Located in intron of: | ENSPTRG00000040482 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPTRG00000004996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.41 % |
Parental protein coverage: | 99.53 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYG-ARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAG |
M.FTT.STFSTNY.SLG.VQAPSY..AR.VSS.ASVYAG..GSGSRIS.S..TSF.G.MGS.GL....AG | |
Retrocopy | MNFTTCSTFSTNYQSLGTVQAPSYV<ARLVSSVASVYAGIRGSGSRISMSCFTSFQGSMGSRGLPAMMAG |
Parental | GLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
GLAGMG.I.NEKETMQSL.D.LASYLDRVRSLET.NR.LES...EHLEKKGPQVRDWSH.FK.IE.LRAQ | |
Retrocopy | GLAGMGVI*NEKETMQSLSDHLASYLDRVRSLETKNRKLESQ--EHLEKKGPQVRDWSHDFKTIENLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEE |
I.ANTVD.A.IVLQIDNA.LA.DDFRVKYETELAM.QSVE.DI.GL.KVIDDTN.T.LQLE.EI.ALKE. | |
Retrocopy | ISANTVDSAHIVLQIDNACLAGDDFRVKYETELAMCQSVESDIRGLHKVIDDTNVTWLQLEAEIKALKEK |
Parental | LLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIR-AQYDELARKNREELDKYWSQQIEES |
LLFMKKNHEEEVKGL.AQIASSGLTVEVDAPKS.DLAKI.ADI..AQYDELA.KN.EEL.KYWS.QIEES | |
Retrocopy | LLFMKKNHEEEVKGL*AQIASSGLTVEVDAPKSHDLAKILADIG<AQYDELAPKNLEELGKYWSLQIEES |
Parental | TTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESE |
T.VVTTQSAEVGAAE.TLTELR.TVQSLEIDLDSM.NLKASLENSLREVEA.Y.L.MEQLNGILLHLESE | |
Retrocopy | TAVVTTQSAEVGAAEMTLTELRHTVQSLEIDLDSMSNLKASLENSLREVEACYTLRMEQLNGILLHLESE |
Parental | LAQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDAL-DSSNSMQTIQ---KTTTRRIV |
LAQTRAEGQ..AQEYEALLNIKVKLEAEIATY.RLLED.EDFNL.....D...S....Q...KTTT.RI. | |
Retrocopy | LAQTRAEGQH*AQEYEALLNIKVKLEAEIATYHRLLEDSEDFNLSILV<DALDSSNSMQTIQKTTTCRIL |
Parental | DGKVVSETNDTKVL |
DGKVVSET.D.KVL | |
Retrocopy | DGKVVSETSDAKVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .34 RPM | 0 .34 RPM |
SRP007412_cerebellum | 0 .11 RPM | 3 .69 RPM |
SRP007412_heart | 0 .03 RPM | 1 .63 RPM |
SRP007412_kidney | 0 .05 RPM | 148 .80 RPM |
SRP007412_liver | 0 .03 RPM | 385 .90 RPM |
SRP007412_testis | 51 .43 RPM | 1 .26 RPM |