RetrogeneDB ID: | retro_hsap_2353 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:182825933..182827205(-) | ||
Located in intron of: | ENSG00000150722 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213958 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSG00000111057 | ||
Aliases: | KRT18, CYK18, K18 | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 81.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAGG |
MSFTTRS.FSTNY..LGSVQ...YGARP.S..ASVYAGAGGSGSRISVSRSTSFRGGMGSG.LA.G.AGG | |
Retrocopy | MSFTTRSIFSTNYLFLGSVQVSNYGARPASCMASVYAGAGGSGSRISVSRSTSFRGGMGSGDLAAGMAGG |
Parental | LAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQI |
LAGMGGIQN.KETMQSLNDRLASYLDRV.................LEKKG.QVRDWSHY.K.IEDLR.QI | |
Retrocopy | LAGMGGIQNKKETMQSLNDRLASYLDRVXXXXXXXXXXXXXXXXXLEKKGLQVRDWSHYLKTIEDLRVQI |
Parental | FANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDD-TNITRLQLETEIEALKEE |
FANTVDNA.IVLQIDNA.LAADDFRVKYETELAM..SV..DIHGL.K...D.TN.T.L.LETE.EALKEE | |
Retrocopy | FANTVDNAGIVLQIDNACLAADDFRVKYETELAMHPSVGSDIHGLHK-VTD>TNVTWLPLETEMEALKEE |
Parental | LLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEEST |
LLFMKKNHEEEVKGLQAQIASS.LTVEVDAPKSQDLAKI.ADIRAQYDEL.RKN.EELDK.WSQQIE.ST | |
Retrocopy | LLFMKKNHEEEVKGLQAQIASSELTVEVDAPKSQDLAKIIADIRAQYDELTRKN*EELDKCWSQQIEKST |
Parental | TVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESEL |
TVVTTQS..VG.AE.TLTELRRTVQSL..DLDSMRNLKASLENSLREVEARY.LQMEQLN.ILLHLESE. | |
Retrocopy | TVVTTQSTKVGDAEMTLTELRRTVQSLKMDLDSMRNLKASLENSLREVEARYTLQMEQLNRILLHLESEM |
Parental | AQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSNSMQTIQ-KTTTRRIVDGKV |
AQ.RAEGQ.Q..EYEALLNIKVKLEAE.ATY.RLL.D..DFNLGDALD.SNSMQTIQ.KTTTRR....KV | |
Retrocopy | AQSRAEGQHQIGEYEALLNIKVKLEAESATYHRLLDD-DDFNLGDALDNSNSMQTIQ<KTTTRR----KV |
Parental | VSETNDTKVLRH |
VSETNDTKVLRH | |
Retrocopy | VSETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 8 .95 RPM |
bodymap2_adrenal | 0 .00 RPM | 10 .71 RPM |
bodymap2_brain | 0 .00 RPM | 1 .24 RPM |
bodymap2_breast | 0 .00 RPM | 37 .70 RPM |
bodymap2_colon | 0 .00 RPM | 68 .51 RPM |
bodymap2_heart | 0 .00 RPM | 3 .58 RPM |
bodymap2_kidney | 0 .00 RPM | 132 .71 RPM |
bodymap2_liver | 0 .00 RPM | 164 .76 RPM |
bodymap2_lung | 0 .00 RPM | 169 .64 RPM |
bodymap2_lymph_node | 0 .00 RPM | 13 .65 RPM |
bodymap2_ovary | 0 .00 RPM | 43 .55 RPM |
bodymap2_prostate | 0 .00 RPM | 60 .43 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .78 RPM |
bodymap2_testis | 0 .08 RPM | 31 .33 RPM |
bodymap2_thyroid | 0 .00 RPM | 148 .47 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1721 |
Macaca mulatta | retro_mmul_948 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |