RetrogeneDB ID: | retro_cfam_118 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:77187174..77187597(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000010507 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSCAFG00000028955 | ||
Aliases: | RPL23, RPL17/L23 | ||
Description: | Canis lupus familiaris ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001003100] |
Percent Identity: | 99.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP | |
Retrocopy | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
Parental | ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA |
ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDN.GVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA | |
Retrocopy | ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNTGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .25 RPM | 101 .39 RPM |
SRP017611_brain | 0 .16 RPM | 26 .44 RPM |
SRP017611_kidney | 0 .66 RPM | 146 .60 RPM |
SRP017611_liver | 0 .00 RPM | 59 .39 RPM |