RetrogeneDB ID: | retro_btau_1588 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:93872180..93872599(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSBTAG00000003229 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:Q3T057] |
Percent Identity: | 84.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSKRGRGGSSGAKFRIS-LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGK |
M.K..RGGSSGAKF..S.LGLP.GA.INCADN.GAKNLYIISVKGIKG.LNRLPAAGVGDMVMATVKKGK | |
Retrocopy | MLK*VRGGSSGAKFQTS<LGLPLGALINCADNIGAKNLYIISVKGIKG*LNRLPAAGVGDMVMATVKKGK |
Parental | PELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI |
.ELRKKVHP.VVIRQ.KSY.RKDG.FLYFEDNAGVIVNNKGEMK..AITGPV.KECA.LW.RI.SNAGS. | |
Retrocopy | AELRKKVHPVVVIRQ*KSYHRKDGLFLYFEDNAGVIVNNKGEMKDFAITGPVVKECAELWSRIPSNAGST |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 380 .67 RPM |
ERP005899_muscle | 0 .42 RPM | 1119 .13 RPM |
SRP017611_brain | 0 .00 RPM | 81 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 274 .55 RPM |
SRP017611_liver | 0 .00 RPM | 179 .63 RPM |
SRP030211_testis | 0 .02 RPM | 110 .96 RPM |