RetrogeneDB ID: | retro_vpac_634 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_875:106468..106779(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSVPAG00000005694 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 82.86 % |
Parental protein coverage: | 74.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGV |
K.L.IISVKGIKGR..RLPAAGVGD..MATVKKGKPELRKKV.PAVVI.Q.K.YRRKDGVFLYFEDN..V | |
Retrocopy | KSLCIISVKGIKGRPKRLPAAGVGDTMMATVKKGKPELRKKVQPAVVI*Q*KPYRRKDGVFLYFEDNTRV |
Parental | IVNNKGEMKGSAITG-PVAKECADLWPRIASNAGS |
IVNNKGEMKGSAITG..VAKE.ADLW.R.ASN.GS | |
Retrocopy | IVNNKGEMKGSAITG<TVAKERADLWSRTASNVGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |