RetrogeneDB ID: | retro_ptro_417 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 10:34323135..34323546(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSPTRG00000009079 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 58.87 % |
Parental protein coverage: | 98.57 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | SKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYI-ISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
SK...G.SS.AK..I.LGL..GAVI..AD.TG.KNL.I..S..G....L.RLP.A.V...VM.TVKKGKP | |
Retrocopy | SK*VHGESSSAKLWIGLGLLIGAVITFADHTGVKNL*I>LSRRG--SQLDRLPTASVSNVVMVTVKKGKP |
Parental | EL-RKKVHPAVVIRQRKSYRRKDGVFLYF-EDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGS |
E..RKKV..AVVI.Q..SYRRK......F.....G.I...KG..KGSAITGPVAKE.ADLWP...SNAGS | |
Retrocopy | EI<RKKVCAAVVI*QQNSYRRKYNI*KEFLKTMQGHIXXXKGKGKGSAITGPVAKERADLWPGLVSNAGS |
Parental | I |
I | |
Retrocopy | I |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 107 .62 RPM |
SRP007412_cerebellum | 0 .00 RPM | 139 .52 RPM |
SRP007412_heart | 0 .00 RPM | 192 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 321 .35 RPM |
SRP007412_liver | 0 .00 RPM | 256 .73 RPM |
SRP007412_testis | 0 .00 RPM | 98 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_556 |
Gorilla gorilla | retro_ggor_504 |
Pongo abelii | retro_pabe_512 |
Macaca mulatta | retro_mmul_2391 |