RetrogeneDB ID: | retro_mmus_1430 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:4074176..4074427(+) | ||
Located in intron of: | ENSMUSG00000005981 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSMUSG00000071415 | ||
Aliases: | Rpl23, 2810009A01Rik | ||
Description: | ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455] |
Percent Identity: | 52.81 % |
Parental protein coverage: | 60.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KGIKGRLNRLPAAGVGDMVMATVKKGKPELRK-KVHPAVVIRQRKS-YRRKDGV-FLYFEDN-AGVIVNN |
.G..G....LPAAGV....MA...K..PELR..KV.P.V...Q.KS.Y.R.DGV..LYFED..A...VNN | |
Retrocopy | EGSQGQMSKLPAAGVCAVGMAS*DK--PELRQ<KV*PPVLLQQQKSQYSRRDGV<VLYFEDK>AEDTVNN |
Parental | KGEMKGSAITGPVAKECAD |
..E.K.SA...P.AKECAD | |
Retrocopy | TDETKNSAMASPAAKECAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 71 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .14 RPM |
SRP007412_heart | 0 .00 RPM | 126 .20 RPM |
SRP007412_kidney | 0 .02 RPM | 162 .24 RPM |
SRP007412_liver | 0 .03 RPM | 144 .65 RPM |
SRP007412_testis | 0 .05 RPM | 107 .21 RPM |