Parental gene:

RPL23, ENSBTAG00000003229

Aliases:None
Description:60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:Q3T057]
Organism:Cow (Bos taurus)
Coordinates:19:40074999..40079360(-)


>ENSBTAG00000003229
ATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGCGAAATTCCGGATTTCCTTGGGTCTTCCGGTTGGAGCCGTGATTAA
CTGTGCTGACAACACAGGAGCCAAAAATCTATATATCATCTCTGTGAAGGGGATCAAGGGACGATTGAATAGACTTCCTG
CTGCTGGTGTGGGTGACATGGTGATGGCCACAGTCAAGAAAGGCAAACCAGAGCTCAGAAAGAAGGTACATCCAGCGGTG
GTAATTCGACAACGAAAGTCATACCGGAGAAAAGATGGTGTGTTTCTTTACTTTGAAGATAATGCAGGGGTCATAGTAAA
CAATAAAGGCGAGATGAAAGGTTCCGCCATCACAGGACCAGTTGCAAAGGAATGTGCAGACTTGTGGCCCAGGATTGCAT
CCAACGCTGGCAGCATTGCATGA

Library Parental gene expression (RPM)
SRP017611_brain 81 .17 RPM
SRP017611_kidney 274 .55 RPM
SRP017611_liver 179 .63 RPM
ERP005899_muscle 1119 .13 RPM
ERP005899_liver 380 .67 RPM
SRP030211_testis 110 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004268 ortholog_one2one 6 retrogenes
retro_amel_1791, retro_amel_226, retro_amel_308, retro_amel_880, retro_amel_918, retro_amel_990,
Canis familiaris ENSCAFG00000028955 ortholog_one2one 1 retrogene
retro_cfam_118,
Choloepus hoffmanni ENSCHOG00000009153 ortholog_one2one 9 retrogenes
retro_chof_1290, retro_chof_1583, retro_chof_1599, retro_chof_1610, retro_chof_2422, retro_chof_2565, retro_chof_520, retro_chof_872, retro_chof_95,
Callithrix jacchus ENSCJAG00000008311 possible_ortholog 9 retrogenes
retro_cjac_1129, retro_cjac_1483, retro_cjac_2283, retro_cjac_2598, retro_cjac_2639, retro_cjac_2772, retro_cjac_2885, retro_cjac_3128, retro_cjac_3831,
Cavia porcellus ENSCPOG00000010002 ortholog_one2one 2 retrogenes
retro_cpor_1212, retro_cpor_263,
Latimeria chalumnae ENSLACG00000004430 ortholog_many2many 1 retrogene
retro_lcha_16,
Loxodonta africana ENSLAFG00000028450 ortholog_one2one 4 retrogenes
retro_lafr_274, retro_lafr_305, retro_lafr_375, retro_lafr_440,
Macropus eugenii ENSMEUG00000001188 ortholog_one2one 2 retrogenes
retro_meug_1717, retro_meug_515,
Macaca mulatta ENSMMUG00000004502 possible_ortholog 9 retrogenes
retro_mmul_1598, retro_mmul_1705, retro_mmul_1955, retro_mmul_2366, retro_mmul_2391, retro_mmul_384, retro_mmul_928, retro_mmul_930, retro_mmul_935,
Mus musculus ENSMUSG00000071415 ortholog_one2one 10 retrogenes
retro_mmus_1146, retro_mmus_1430, retro_mmus_2153, retro_mmus_2297, retro_mmus_2319, retro_mmus_2826, retro_mmus_3603, retro_mmus_3704, retro_mmus_583, retro_mmus_657,
Nomascus leucogenys ENSNLEG00000000642 possible_ortholog 7 retrogenes
retro_nleu_1506, retro_nleu_181, retro_nleu_2056, retro_nleu_2337, retro_nleu_2988, retro_nleu_574, retro_nleu_8,
Ornithorhynchus anatinus ENSOANG00000001230 ortholog_one2one 1 retrogene
retro_oana_76,
Oryctolagus cuniculus ENSOCUG00000013915 possible_ortholog 6 retrogenes
retro_ocun_1027, retro_ocun_1196, retro_ocun_1270, retro_ocun_1919, retro_ocun_251, retro_ocun_482,
Otolemur garnettii ENSOGAG00000012445 ortholog_one2one 7 retrogenes
retro_ogar_1050, retro_ogar_1645, retro_ogar_1695, retro_ogar_2250, retro_ogar_277, retro_ogar_3145, retro_ogar_539,
Ochotona princeps ENSOPRG00000001957 possible_ortholog 10 retrogenes
retro_opri_1079, retro_opri_1216, retro_opri_137, retro_opri_14, retro_opri_178, retro_opri_202, retro_opri_224, retro_opri_481, retro_opri_639, retro_opri_684,
Pongo abelii ENSPPYG00000008501 ortholog_one2one 10 retrogenes
retro_pabe_2083, retro_pabe_2085, retro_pabe_2951, retro_pabe_3145, retro_pabe_3147, retro_pabe_3316, retro_pabe_3340, retro_pabe_3362, retro_pabe_455, retro_pabe_512,
Pan troglodytes ENSPTRG00000009079 ortholog_one2one 9 retrogenes
retro_ptro_1467, retro_ptro_164, retro_ptro_1677, retro_ptro_1679, retro_ptro_2428, retro_ptro_2512, retro_ptro_2513, retro_ptro_2738, retro_ptro_417,
Pteropus vampyrus ENSPVAG00000002277 possible_ortholog 2 retrogenes
retro_pvam_488, retro_pvam_890,
Rattus norvegicus ENSRNOG00000004107 possible_ortholog 10 retrogenes
retro_rnor_1195, retro_rnor_1539, retro_rnor_1622, retro_rnor_2445, retro_rnor_2483, retro_rnor_2688, retro_rnor_2981, retro_rnor_347, retro_rnor_498, retro_rnor_941,
Sus scrofa ENSSSCG00000021590 ortholog_one2one 3 retrogenes
retro_sscr_1115, retro_sscr_135, retro_sscr_332,
Vicugna pacos ENSVPAG00000005694 ortholog_one2one 2 retrogenes
retro_vpac_29, retro_vpac_634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_65 90.15 94.29
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2. retro_btau_349 59.85 95.71
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3. retro_btau_953 76.77 70.00
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4. retro_btau_974 80.17 85.00
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5. retro_btau_1588 84.40 100.00
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Download FASTA sequences of all ENSBTAG00000003229 retrocopies