RetrogeneDB ID: | retro_btau_349 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:69202542..69202941(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSBTAG00000003229 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:Q3T057] |
Percent Identity: | 59.85 % |
Parental protein coverage: | 95.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNR-LPAAGVGDMVMATVKKGK |
M.K.G.GGSS.AK..IS.GL.VGA.INCA..TGA..LY.ISVK.I.G..NR..PA.G.GDM.M.TVK..K | |
Retrocopy | M*KQGCGGSSCAKSCISWGLLVGAMINCANSTGARILYTISVKWIEGQTNR<IPASGAGDMMMITVKREK |
Parental | P-ELRKKVHPAVVIRQRKSYRRK-DGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAS |
..E.R.KVH.AVVI.Q.KS..RK.DGVF.YF.....VI.N.KG..KGSAIT.P.AK...DL.P..A. | |
Retrocopy | Q<EFRRKVHSAVVIQQWKSSQRK<DGVFHYFGHHVKVIINSKG*VKGSAITRPAAKA*TDLCPVLAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 380 .67 RPM |
ERP005899_muscle | 0 .00 RPM | 1119 .13 RPM |
SRP017611_brain | 0 .00 RPM | 81 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 274 .55 RPM |
SRP017611_liver | 0 .00 RPM | 179 .63 RPM |
SRP030211_testis | 0 .18 RPM | 110 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Sus scrofa | retro_sscr_135 |