RetrogeneDB ID: | retro_sscr_332 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:122131165..122131452(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSSSCG00000021590 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001129955] |
Percent Identity: | 76.29 % |
Parental protein coverage: | 68.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK-NLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGK |
M.K.G..GSS.AKF.IS..L.V..V.NCADN.GAK.NLYIISVKG.KGRLNRLPA.GVG.MVMAT.KKG. | |
Retrocopy | MLK*GLCGSSDAKFWISFTLLVESVTNCADNMGAK<NLYIISVKGSKGRLNRLPALGVGAMVMATIKKGT |
Parental | PELRKKVHPAVVIRQRKSYRRKDGVFL |
.ELRKKVHPAVVI.Q.KSY.RKDGVFL | |
Retrocopy | LELRKKVHPAVVIQQ*KSYWRKDGVFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 162 .46 RPM |
SRP014902_testis | 0 .00 RPM | 656 .17 RPM |
SRP018288_heart | 0 .00 RPM | 596 .90 RPM |
SRP018288_kidney | 0 .00 RPM | 461 .01 RPM |
SRP018288_liver | 0 .00 RPM | 455 .10 RPM |
SRP018288_lung | 0 .00 RPM | 353 .13 RPM |
SRP018856_adipose | 0 .00 RPM | 896 .97 RPM |
SRP035408_brain | 0 .06 RPM | 714 .29 RPM |
SRP035408_liver | 0 .12 RPM | 744 .52 RPM |